Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0322
         (847 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0502 + 21493442-21494341                                         30   2.7  
06_03_0279 + 19100499-19100927                                         30   2.7  
05_05_0385 + 24566916-24567503,24568609-24568824,24568916-245692...    29   4.7  
03_06_0271 - 32773895-32774608                                         29   4.7  
01_06_0933 - 33161687-33162205,33162290-33162376,33162459-331626...    29   4.7  
07_03_0283 + 16241231-16241625,16241774-16241783                       29   6.2  
02_05_0817 + 31994241-31995908                                         28   8.1  

>06_03_0502 + 21493442-21494341
          Length = 299

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = +1

Query: 499 LRCQXPGATRXPXISWMRHHDEDGSTENFMDRRATYSPE 615
           +  + P  TR P   W+R  DED   E F D      PE
Sbjct: 202 VEARRPATTREPPRVWLRVADEDPEPEEFDDEADDDEPE 240


>06_03_0279 + 19100499-19100927
          Length = 142

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = +2

Query: 164 PAEVLFREGQATRLECATEGDDSGVEYSWRKTACILASVKTRSPLSTLALLC 319
           PA+VL   G+ T + C     D+G+  S        A  +  SPL+ L+ LC
Sbjct: 22  PAQVLASSGRHTMMRCVGRDGDNGLRRS-EHVVAERAEEEKPSPLNALSHLC 72


>05_05_0385 +
           24566916-24567503,24568609-24568824,24568916-24569241,
           24569906-24570338,24570769-24571281
          Length = 691

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +2

Query: 242 YSWRKTACILASVKTRSPLSTLALLCSAKPKLRTKASTSASP 367
           Y  RKT   L+ ++ R PLS  + L   K +L T   TS  P
Sbjct: 644 YKHRKTLASLSFIRPRRPLSRCSSLGEEKLRLYTAILTSPKP 685


>03_06_0271 - 32773895-32774608
          Length = 237

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
 Frame = +2

Query: 194 ATRLECATEGDDSGVEYSWRKTACILASVKTRSPLS-TLALLCSAKPKLRTKASTSASPK 370
           AT+ +C   GDD GV           AS         T+A+  +  P   + A+T+A+ +
Sbjct: 2   ATKRKCPANGDDGGVADLEPVAGGSFASPPPEKKAKLTVAVAVAVAPSSSSSATTAAAGE 61

Query: 371 ATLGSPAQGLLSSAR 415
           AT      G  + AR
Sbjct: 62  ATAKREHGGFFAFAR 76


>01_06_0933 -
           33161687-33162205,33162290-33162376,33162459-33162695,
           33162778-33162886,33162997-33163313,33163398-33163607,
           33165380-33165901
          Length = 666

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +2

Query: 242 YSWRKTACILASVKTRSPLSTLALLCSAKPKLRTKASTSASP 367
           Y  RKT   L+ ++ R PLS  + L   K +L T   TS  P
Sbjct: 617 YKHRKTLASLSFIRPRRPLSRCSSLGEEKLRLYTAILTSPKP 658


>07_03_0283 + 16241231-16241625,16241774-16241783
          Length = 134

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 12/34 (35%), Positives = 23/34 (67%)
 Frame = -2

Query: 219 SVAHSSLVACPSLNNTSAGASLRTGTLSPELTGC 118
           +VA  ++VAC +  ++S+ + L  GT++  L+GC
Sbjct: 11  AVAAMAVVACFAATSSSSSSQLHCGTVTSLLSGC 44


>02_05_0817 + 31994241-31995908
          Length = 555

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 21/55 (38%), Positives = 27/55 (49%)
 Frame = -2

Query: 234 PLSSPSVAHSSLVACPSLNNTSAGASLRTGTLSPELTGCPVV*ITHVPKTNNVQE 70
           PLSS + AHS+  + P LN TS     R   L P L    +   THV    N+Q+
Sbjct: 21  PLSSLAAAHSANRSSPRLNPTSVPPPPRQLHL-PTLQARRLCSTTHVVLPTNLQD 74


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,449,786
Number of Sequences: 37544
Number of extensions: 458320
Number of successful extensions: 1365
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1365
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)