Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0322
         (847 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              32   0.008
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   2.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   2.0  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    23   2.7  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   4.7  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    22   6.2  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 31.9 bits (69), Expect = 0.008
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 283  DTLTTIDAGSLVFSQTKASDEGEYQCFAKSDFG 381
            D L  +  GSL   +   +D GEY C+ ++ FG
Sbjct: 1321 DRLRQLPEGSLFIKEVDRTDAGEYSCYVENTFG 1353



 Score = 25.4 bits (53), Expect = 0.66
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 298 IDAGSLVFSQTKASDEGEYQCFAKSD 375
           ++   L     K  D+G YQCF ++D
Sbjct: 350 LEEAVLRIESVKKEDKGMYQCFVRND 375



 Score = 24.6 bits (51), Expect = 1.2
 Identities = 7/26 (26%), Positives = 14/26 (53%)
 Frame = +1

Query: 304 AGSLVFSQTKASDEGEYQCFAKSDFG 381
           +G+L+  + +  D G+Y C   +  G
Sbjct: 269 SGTLIIREARVEDSGKYLCIVNNSVG 294


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
 Frame = +1

Query: 268 FSVGQDTLTTIDAGSLV-FSQTKASDEGEYQCFAKSDFGVASTRATKL 408
           F +GQ      D  S V  S     D GEY C A++  G   T A +L
Sbjct: 468 FMIGQYVTVHGDVISHVNISHVMVEDGGEYSCMAENRAGKV-THAARL 514



 Score = 22.6 bits (46), Expect = 4.7
 Identities = 10/37 (27%), Positives = 15/37 (40%)
 Frame = +2

Query: 146 PVLKEAPAEVLFREGQATRLECATEGDDSGVEYSWRK 256
           P+++    +    EG  TR  C     D  +  SW K
Sbjct: 611 PIIEPFTFQEGLSEGMRTRTVCGVAAGDPPLTISWLK 647



 Score = 22.6 bits (46), Expect = 4.7
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 313 LVFSQTKASDEGEYQCFAKSDFG 381
           L  S  +ASD G Y C A + +G
Sbjct: 872 LQISSAEASDSGAYFCQASNLYG 894


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
 Frame = +1

Query: 268 FSVGQDTLTTIDAGSLV-FSQTKASDEGEYQCFAKSDFGVASTRATKL 408
           F +GQ      D  S V  S     D GEY C A++  G   T A +L
Sbjct: 468 FMIGQYVTVHGDVISHVNISHVMVEDGGEYSCMAENRAGKV-THAARL 514



 Score = 22.6 bits (46), Expect = 4.7
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 313 LVFSQTKASDEGEYQCFAKSDFG 381
           L  S  +ASD G Y C A + +G
Sbjct: 868 LQISSAEASDSGAYFCQASNLYG 890


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 190 SLSEQYLGRCLLENGNLVPGINGLPRSV 107
           +L  +YL RCLLE   + P +  + R +
Sbjct: 394 TLEMKYLERCLLETLRMYPPVPLIAREI 421


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 110 TTGQPVNSGDKVPVLKEAPAEVLFRE 187
           T G     G K+PV   AP  + FR+
Sbjct: 789 TEGAYTTRGGKIPVRWTAPEAIAFRK 814


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 274 VGQDTLTTIDAGSLVFSQT 330
           VG+  L T+DAG  +F  T
Sbjct: 160 VGEHLLMTVDAGDSMFVHT 178


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,732
Number of Sequences: 438
Number of extensions: 4110
Number of successful extensions: 16
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27188448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)