Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0322
         (847 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g12860.1 68418.m01476 oxoglutarate/malate translocator, putat...    29   5.1  
At3g22520.1 68416.m02846 expressed protein                             29   5.1  
At1g67025.1 68414.m07621 hypothetical protein                          29   5.1  
At4g15490.1 68417.m02367 UDP-glucoronosyl/UDP-glucosyl transfera...    28   6.8  
At3g61740.1 68416.m06923 PHD finger family protein (ATX3) contai...    28   6.8  
At4g15500.1 68417.m02368 UDP-glucoronosyl/UDP-glucosyl transfera...    28   9.0  
At3g49830.1 68416.m05448 DNA helicase-related similar to DNA hel...    28   9.0  

>At5g12860.1 68418.m01476 oxoglutarate/malate translocator, putative
           similar to 2-oxoglutarate/malate translocator precursor,
           spinach, SWISSPROT:Q41364
          Length = 557

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 38/138 (27%), Positives = 56/138 (40%), Gaps = 5/138 (3%)
 Frame = +2

Query: 35  LRSFLSFRIKMNSWTLLVLGTCVIYTTGQPVNSGDKVPVLKEAPAEVLFREGQATRLECA 214
           L+S L   ++  S TL+   + V   +  P       PV  +  A        AT L   
Sbjct: 47  LKSPLPVSLRRRSSTLVKASSTVASASSSPTPPLVPAPVPWQGAAIKPLLASIATGLILW 106

Query: 215 TEGDDSGV-EYSWRKTACILASVK---TRS-PLSTLALLCSAKPKLRTKASTSASPKATL 379
                 GV   +W+  A  LA++    T+  PL  +AL+      L TK  T A+  +  
Sbjct: 107 FVPVPEGVTRNAWQLLAIFLATIVGIITQPLPLGAVALMGLGASVL-TKTLTFAAAFSAF 165

Query: 380 GSPAQGLLSSARFXTRGF 433
           G P   L++ A F  RGF
Sbjct: 166 GDPIPWLIALAFFFARGF 183


>At3g22520.1 68416.m02846 expressed protein
          Length = 600

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 30/99 (30%), Positives = 43/99 (43%)
 Frame = +2

Query: 119 QPVNSGDKVPVLKEAPAEVLFREGQATRLECATEGDDSGVEYSWRKTACILASVKTRSPL 298
           QP N  D   + +E P EV    GQ    E A +G  +   YS RK    + + +T  P+
Sbjct: 197 QPANKVDAASLFEETPKEVQTEVGQND--ENAQDGKGNS-RYSQRKRK-PMPTPQTYEPV 252

Query: 299 STLALLCSAKPKLRTKASTSASPKATLGSPAQGLLSSAR 415
                   AKPK   + S++   K    +PA G  SS +
Sbjct: 253 -------EAKPKSTPRGSSNKKKKGAT-TPATGPQSSTK 283


>At1g67025.1 68414.m07621 hypothetical protein
          Length = 221

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +3

Query: 102 LFTLRGSPLIPGTRFPFSRRHRPRYCSERDRPRGWSAPQRETTVVSN 242
           +  L G  L+P   +PF   ++P YC + +        Q  T V++N
Sbjct: 5   IIKLEGPRLLPNVTYPFWGVNKPNYCGQTEFQLTCKNNQNLTLVLTN 51


>At4g15490.1 68417.m02367 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase ;simalr to
           UDP-glucose:sinapate glucosyltransferase GI:9794913 from
           [Brassica napus]
          Length = 479

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 9/18 (50%), Positives = 16/18 (88%)
 Frame = -3

Query: 347 PSSEALVWLNTREPASIV 294
           P+S+ + WL++REP+S+V
Sbjct: 266 PASDCMEWLDSREPSSVV 283


>At3g61740.1 68416.m06923 PHD finger family protein (ATX3) contains
           Pfam domains PF00628: PHD-finger and PF00855: PWWP
           domain; identical to cDNA trithorax 3 (ATX3) partial cds
           GI:15217142
          Length = 799

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
 Frame = +2

Query: 227 DSGVEYSWRKTACILASVKTRSPLSTLALLCSAKPKLRTKASTSASPKATLGSPAQGLLS 406
           DS +EY  +K   I+   + R+   T+   CS +P+L T +S+S + K            
Sbjct: 21  DSEIEYGRKKGEIIVYKKRQRA---TVDQPCSKEPELLTSSSSSLTSKEESQQVCSDQSK 77

Query: 407 SARFXTRGFXHR--DSCI*GXKSDGGRRK 487
           S+R   R    R  DS +   KS   RRK
Sbjct: 78  SSRGRVRAVPSRFKDSIVGTWKS--SRRK 104


>At4g15500.1 68417.m02368 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 475

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = -3

Query: 347 PSSEALVWLNTREPASIV 294
           P S+ + WL++REP+S+V
Sbjct: 262 PDSDCIEWLDSREPSSVV 279


>At3g49830.1 68416.m05448 DNA helicase-related similar to DNA
           helicase GI:4521249 from [Mus musculus]
          Length = 473

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +1

Query: 259 GMHFSVGQDTLTTIDAGSLVFSQTKASDEGEYQCFAKS 372
           G+  S+GQ+T  T+ AGS +FS   +  E   Q F K+
Sbjct: 85  GIAKSLGQETPFTMIAGSEIFSLEMSKTEALTQAFRKA 122


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,592,719
Number of Sequences: 28952
Number of extensions: 346907
Number of successful extensions: 937
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 937
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1960634400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)