Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0321
         (658 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0030 + 7529814-7530257,7530409-7530462,7531605-7532793,753...    32   0.46 
08_02_1330 + 26191062-26191314,26191894-26191961,26192125-261923...    30   1.4  
08_02_0403 - 16778435-16778690,16779201-16779277,16779783-167798...    28   5.7  

>05_03_0030 +
           7529814-7530257,7530409-7530462,7531605-7532793,
           7532861-7533522
          Length = 782

 Score = 31.9 bits (69), Expect = 0.46
 Identities = 18/50 (36%), Positives = 29/50 (58%)
 Frame = -3

Query: 275 VVVVPFHLMCSHCSPSYVFALRLIALSLQNEILFRIQLLKYSVFN*NEAD 126
           V+V+   L+CSH SP    ++RL+   L+ E    +Q   +S F+ NEA+
Sbjct: 710 VLVLKLGLLCSHSSPKVRPSMRLVMQYLEREA--TLQDFAFSFFSINEAN 757


>08_02_1330 +
           26191062-26191314,26191894-26191961,26192125-26192355,
           26192736-26192837,26192893-26192955,26193910-26193984
          Length = 263

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = -3

Query: 422 WE-KLHIARKESLNDSSSKNSNWYFPKLPSSLRMPSRLKE 306
           WE K+H+ RK S+ D   K S    P+L S++++P  + E
Sbjct: 102 WEFKVHVMRKSSVPDLREKLSGVQRPQLNSTVQIPKSVPE 141


>08_02_0403 -
           16778435-16778690,16779201-16779277,16779783-16779834,
           16780128-16780186,16781959-16782135
          Length = 206

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 266 VPFHLMCSHCSPSYVFALRLIALSLQNEILFRIQL 162
           VP  + C HCS SY   LR +   L   I+F +++
Sbjct: 61  VPTPIACYHCSSSYGLLLRSVHAILPCYIMFLLEV 95


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,314,442
Number of Sequences: 37544
Number of extensions: 227529
Number of successful extensions: 402
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 402
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)