Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0321
         (658 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g33210.1 68418.m03923 zinc finger protein-related similar to ...    30   1.2  
At3g42760.1 68416.m04465 hypothetical protein similar to At3g433...    29   3.6  
At2g02770.1 68415.m00220 COP1-interacting protein-related simila...    28   4.8  

>At5g33210.1 68418.m03923 zinc finger protein-related similar to
           lateral root primordium 1 (LRP1) [Arabidopsis thaliana]
           GI:882341; contains Pfam profile PF05142: Domain of
           unknown function (DUF702),  TIGR01623: putative zinc
           finger domain, LRP1 type
          Length = 173

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = -3

Query: 347 KLPSSLRMPSRLKESDN*DSTIL*VVVVPFHLMCSHCSPSYVFALRLIALSLQNEILF 174
           +LP    +P R +E+    S+ L    +PFH    HC+  Y+F    I L L    ++
Sbjct: 108 QLPRGESVPKRHRENLPATSSSLVCTRIPFHSGICHCNVKYLFMCIYICLLLYGREIY 165


>At3g42760.1 68416.m04465 hypothetical protein similar to At3g43370,
           At2g14780, At1g34710, At1g27810, At1g25784, At4g08890
          Length = 237

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = +2

Query: 389 EIPSWRCVIFPKKIFXNVFTADEVKFRCAIPEXRYTNSKFYATWD-SIRFXXHXRXPATE 565
           +I  WR  +F  ++F NV + +  +    + +   +NS+  AT D  +      R    E
Sbjct: 13  QITGWRIYVFVVRVFKNVISPNVFELGLILADYAGSNSRIEATVDRRLAPFYEDRFVENE 72

Query: 566 WR 571
           W+
Sbjct: 73  WK 74


>At2g02770.1 68415.m00220 COP1-interacting protein-related similar
           to COP1-interacting protein 4 (CIP4) [Arabidopsis
           thaliana] GI:13160646, COP1-interacting protein 4.1
           (CIP4.1) [Arabidopsis thaliana] GI:13160650
          Length = 548

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 443 FTADEVKFRCAIPEXRYTNSKFYATW 520
           ++ADEVKF  AIP+      +F   W
Sbjct: 473 YSADEVKFLSAIPDPEVQRKEFIKLW 498


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,404,498
Number of Sequences: 28952
Number of extensions: 182287
Number of successful extensions: 398
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 398
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)