Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0320
(826 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 169 4e-43
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 93 4e-20
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 92 8e-20
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 87 2e-18
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 59 9e-10
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 47 4e-06
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 43 6e-05
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 32 0.086
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 28 1.8
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 27 3.2
SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|c... 26 7.5
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc... 26 7.5
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 26 7.5
SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyce... 25 9.9
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 169 bits (411), Expect = 4e-43
Identities = 97/175 (55%), Positives = 107/175 (61%), Gaps = 1/175 (0%)
Frame = +2
Query: 251 QRGILTLKYPIEHXIVTNWDDMEKIWXHTFXNELRVAPEEHPVLLTEAPLNPKAQKPXGG 430
+RGILTLKYPIEH IV NWDDMEKIW HTF NELRVAPEEHP LLTEAPLNPK+
Sbjct: 61 KRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKS-----N 115
Query: 431 KEXMXQIMFXTFNTPAMYVAIQAVLSCXRPVVTTGIVLDSGDGVSTPYPSTRGTHSPTAS 610
+E M QI+F TFN PA YVAIQAVLS TTGIVLDSGDGV+ P G P A
Sbjct: 116 REKMTQIIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAI 175
Query: 611 WS-GLGRSRSHRYLMKISPXAGKSXXXXXXXXXXS*YQXEAV*VALEFXQEMATA 772
L YLMKI G + + + VAL+F QE+ TA
Sbjct: 176 MRLDLAGRDLTDYLMKILMERGYTFSTTAEREIVRDIKEKLCYVALDFEQELQTA 230
Score = 121 bits (292), Expect = 1e-28
Identities = 54/60 (90%), Positives = 58/60 (96%)
Frame = +3
Query: 75 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSXVGDEAQSK 254
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDS VGDEAQSK
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Score = 43.2 bits (97), Expect = 5e-05
Identities = 29/70 (41%), Positives = 33/70 (47%)
Frame = +3
Query: 615 LDLXGRDLTDTS*RSHRARVNRXITTAERGIVRDIXXKLCKXLSNSXRRWQRLIQEFPRG 794
LDL GRDLTD + R TTAER IVRDI KLC + + Q Q
Sbjct: 178 LDLAGRDLTDYLMKILMERGYTFSTTAEREIVRDIKEKLCYVALDFEQELQTAAQSSSLE 237
Query: 795 SLXEXSEGQV 824
E +GQV
Sbjct: 238 KSYELPDGQV 247
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 93.1 bits (221), Expect = 4e-20
Identities = 48/119 (40%), Positives = 69/119 (57%), Gaps = 1/119 (0%)
Frame = +2
Query: 254 RGILTLKYPIEHXIVTNWDDMEKIWXHTFXNE-LRVAPEEHPVLLTEAPLNPKAQKPXGG 430
RG+L ++ PIE I+ NW DME+IW + + ++ L PEEHP+LLTE PL
Sbjct: 66 RGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPL-----ANIRN 120
Query: 431 KEXMXQIMFXTFNTPAMYVAIQAVLSCXRPVVTTGIVLDSGDGVSTPYPSTRGTHSPTA 607
KE + + + T N PA+ ++Q VL+ TTGIVL+ GDG++ P G P+A
Sbjct: 121 KEKIAEYFYETLNVPALSFSLQPVLALYASARTTGIVLECGDGLTHSVPIYDGFSIPSA 179
Score = 68.1 bits (159), Expect = 1e-12
Identities = 30/53 (56%), Positives = 38/53 (71%)
Frame = +3
Query: 93 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSXVGDEAQS 251
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD VG EAQ+
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQN 64
Score = 29.9 bits (64), Expect = 0.46
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +3
Query: 618 DLXGRDLTDTS*RSHRARVNRXITTAERGIVRDIXXKLCKXLSN 749
++ GRD+TD R + +++AE+ IVR+I K C S+
Sbjct: 184 EIGGRDVTDYLQLQLRKSGHELVSSAEKEIVREIKEKCCYVASD 227
Score = 26.2 bits (55), Expect = 5.6
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +1
Query: 565 HTVPIYEGYALPHGI 609
H+VPIY+G+++P I
Sbjct: 166 HSVPIYDGFSIPSAI 180
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 92.3 bits (219), Expect = 8e-20
Identities = 43/108 (39%), Positives = 70/108 (64%)
Frame = +2
Query: 254 RGILTLKYPIEHXIVTNWDDMEKIWXHTFXNELRVAPEEHPVLLTEAPLNPKAQKPXGGK 433
R +L +KYP+E+ I+ ++++M ++W +TF +L++ P +LLTE P+NP A +
Sbjct: 62 RSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVA-----NR 116
Query: 434 EXMXQIMFXTFNTPAMYVAIQAVLSCXRPVVTTGIVLDSGDGVSTPYP 577
E M + MF + +YVAIQAVLS +++G+V+DSGDGV+ P
Sbjct: 117 EKMCETMFERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGDGVTHIVP 164
Score = 54.4 bits (125), Expect = 2e-08
Identities = 29/59 (49%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Frame = +3
Query: 81 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSXVGDEAQS 251
E A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA++
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEA 60
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 87.4 bits (207), Expect = 2e-18
Identities = 50/116 (43%), Positives = 63/116 (54%), Gaps = 8/116 (6%)
Frame = +2
Query: 266 TLKYPIEHXIVTNWDDMEKIWXHTFXNELRVAPEEHPVLLTEAPLNPKAQKPXGGKEXMX 445
+L YPI H + NWD ME+ W + LR PE+H LLTE PLNP +E
Sbjct: 89 SLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPE-----NRENTA 143
Query: 446 QIMFXTFNTPAMYVAIQAVL----SCXRPVVT----TGIVLDSGDGVSTPYPSTRG 589
+IMF +FN +Y+A+QAVL S VT TG V+DSGDGV+ P G
Sbjct: 144 EIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTHIIPVAEG 199
Score = 40.7 bits (91), Expect = 2e-04
Identities = 14/28 (50%), Positives = 23/28 (82%)
Frame = +3
Query: 93 LVVDNGSGMCKAGFAGDDAPRAVFPSIV 176
+++DNG+G K G+AG+DAP VFP+++
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVI 35
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 58.8 bits (136), Expect = 9e-10
Identities = 39/133 (29%), Positives = 66/133 (49%), Gaps = 6/133 (4%)
Frame = +2
Query: 278 PIEHXIVTNWDDMEKIWXHTFXNELRVAPEEHPVLLTEAPLNPKAQKPXGGKEXMXQIMF 457
P E +++NWD ME++ +TF +L + EHP+ +TE NP + M +++F
Sbjct: 86 PFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYV-----RSTMTELLF 139
Query: 458 XTFNTPAMYVAIQAVLSCXRPV--VTTGIVLDSGDGVSTPYPSTRG----THSPTASWSG 619
+N P++ I + S ++GIVL+ G+ S P G + + SW G
Sbjct: 140 ELYNAPSVAYGIDGLFSFYHNTKPSSSGIVLNLGNAASHVIPVLNGERILSEAKRISWGG 199
Query: 620 LGRSRSHRYLMKI 658
S+S YL+K+
Sbjct: 200 ---SQSSSYLLKL 209
Score = 35.9 bits (79), Expect = 0.007
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +3
Query: 93 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 188
LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 46.8 bits (106), Expect = 4e-06
Identities = 27/97 (27%), Positives = 44/97 (45%)
Frame = +2
Query: 263 LTLKYPIEHXIVTNWDDMEKIWXHTFXNELRVAPEEHPVLLTEAPLNPKAQKPXGGKEXM 442
+ +K I + V NWD +W + +L+ P EHP+L+TE P + P +
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITE-PFD----NPPENRVKT 117
Query: 443 XQIMFXTFNTPAMYVAIQAVLSCXRPVVTTGIVLDSG 553
+ MF + PA Y+A Q + T ++D G
Sbjct: 118 LETMFESLRCPATYLAKQETCAAFASGKGTACLVDIG 154
Score = 40.3 bits (90), Expect = 3e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +3
Query: 78 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 179
+EV+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 42.7 bits (96), Expect = 6e-05
Identities = 23/99 (23%), Positives = 46/99 (46%)
Frame = +2
Query: 293 IVTNWDDMEKIWXHTFXNELRVAPEEHPVLLTEAPLNPKAQKPXGGKEXMXQIMFXTFNT 472
I+ +W+ W +L+V P E+ +++TE NP++ ++ + + F +
Sbjct: 76 IIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSV-----RQQIMEAAFEQLHV 130
Query: 473 PAMYVAIQAVLSCXRPVVTTGIVLDSGDGVSTPYPSTRG 589
PA Y+ QAV +T +++D G ++ P G
Sbjct: 131 PAFYLTKQAVCVAFANSKSTALIVDIGSDNASVTPVVDG 169
Score = 36.7 bits (81), Expect = 0.004
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +3
Query: 78 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 179
EE+ +LV+D GS + G+AG+++P + PS G
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 32.3 bits (70), Expect = 0.086
Identities = 23/67 (34%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
Frame = -1
Query: 259 TSLLCASS----PTXESFCPI-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTT 95
TS C +S PT S P+ PT+ P P N S P PL+TT
Sbjct: 389 TSTSCTTSTSIPPTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATT 448
Query: 94 NAATSSS 74
N TS+S
Sbjct: 449 NCTTSTS 455
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.9 bits (59), Expect = 1.8
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -1
Query: 238 SPTXESFC--PIPTITP*WRGLPTIEGNTARGASSPAKPAL 122
S T +SF P+PT P LPT NT + P+ PAL
Sbjct: 64 SNTPKSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 27.1 bits (57), Expect = 3.2
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +3
Query: 138 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSXVGDEAQS 251
G+ PRA F ++ P H G+++ M KD G+E S
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMS 537
>SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 488
Score = 25.8 bits (54), Expect = 7.5
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = -3
Query: 236 TYXRVLLSHTDHHALMAGPSDDRGEYGARSIISCETGLAHTG 111
TY +LL D + + G +DR + + + + C L H+G
Sbjct: 226 TYPSLLLEEWDRYLMQNGSENDRPDSYSSTQLYCVLCLDHSG 267
>SPCP1E11.04c |pal1||membrane associated protein Pal1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 425
Score = 25.8 bits (54), Expect = 7.5
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -2
Query: 132 NRPCTYRSHCLLPTRQLP 79
NRP YRSH + TR+ P
Sbjct: 323 NRPSNYRSHSSMGTRRSP 340
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 25.8 bits (54), Expect = 7.5
Identities = 18/92 (19%), Positives = 35/92 (38%)
Frame = +2
Query: 278 PIEHXIVTNWDDMEKIWXHTFXNELRVAPEEHPVLLTEAPLNPKAQKPXGGKEXMXQIMF 457
PI+ V +W+ ++ W H + L+ P + + P +E Q F
Sbjct: 113 PIQRGRVVDWEALKAFWKHLYSLLLK-DPNDTTFRYPVCLVIP-TYWSLYDRELATQFFF 170
Query: 458 XTFNTPAMYVAIQAVLSCXRPVVTTGIVLDSG 553
P +A + ++ + G+V+D G
Sbjct: 171 EECQVPGFTIAYEPLMGLYAIGILHGLVIDIG 202
>SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 473
Score = 25.4 bits (53), Expect = 9.9
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 555 TVSPHRTHLRGVRTPPRHPGLDLXGRD 635
T++ H +RG+ PRHP L G D
Sbjct: 200 TLTGHIATVRGLAVSPRHPYLFSCGED 226
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,271,633
Number of Sequences: 5004
Number of extensions: 67502
Number of successful extensions: 205
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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