BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fbpv0320 (826 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 169 4e-43 SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 93 4e-20 SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 92 8e-20 SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 87 2e-18 SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 59 9e-10 SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 47 4e-06 SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 43 6e-05 SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 32 0.086 SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 28 1.8 SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 27 3.2 SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|c... 26 7.5 SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc... 26 7.5 SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 26 7.5 SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyce... 25 9.9 >SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2|||Manual Length = 375 Score = 169 bits (411), Expect = 4e-43 Identities = 97/175 (55%), Positives = 107/175 (61%), Gaps = 1/175 (0%) Frame = +2 Query: 251 QRGILTLKYPIEHXIVTNWDDMEKIWXHTFXNELRVAPEEHPVLLTEAPLNPKAQKPXGG 430 +RGILTLKYPIEH IV NWDDMEKIW HTF NELRVAPEEHP LLTEAPLNPK+ Sbjct: 61 KRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKS-----N 115 Query: 431 KEXMXQIMFXTFNTPAMYVAIQAVLSCXRPVVTTGIVLDSGDGVSTPYPSTRGTHSPTAS 610 +E M QI+F TFN PA YVAIQAVLS TTGIVLDSGDGV+ P G P A Sbjct: 116 REKMTQIIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAI 175 Query: 611 WS-GLGRSRSHRYLMKISPXAGKSXXXXXXXXXXS*YQXEAV*VALEFXQEMATA 772 L YLMKI G + + + VAL+F QE+ TA Sbjct: 176 MRLDLAGRDLTDYLMKILMERGYTFSTTAEREIVRDIKEKLCYVALDFEQELQTA 230 Score = 121 bits (292), Expect = 1e-28 Identities = 54/60 (90%), Positives = 58/60 (96%) Frame = +3 Query: 75 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSXVGDEAQSK 254 +EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDS VGDEAQSK Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61 Score = 43.2 bits (97), Expect = 5e-05 Identities = 29/70 (41%), Positives = 33/70 (47%) Frame = +3 Query: 615 LDLXGRDLTDTS*RSHRARVNRXITTAERGIVRDIXXKLCKXLSNSXRRWQRLIQEFPRG 794 LDL GRDLTD + R TTAER IVRDI KLC + + Q Q Sbjct: 178 LDLAGRDLTDYLMKILMERGYTFSTTAEREIVRDIKEKLCYVALDFEQELQTAAQSSSLE 237 Query: 795 SLXEXSEGQV 824 E +GQV Sbjct: 238 KSYELPDGQV 247 >SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 379 Score = 93.1 bits (221), Expect = 4e-20 Identities = 48/119 (40%), Positives = 69/119 (57%), Gaps = 1/119 (0%) Frame = +2 Query: 254 RGILTLKYPIEHXIVTNWDDMEKIWXHTFXNE-LRVAPEEHPVLLTEAPLNPKAQKPXGG 430 RG+L ++ PIE I+ NW DME+IW + + ++ L PEEHP+LLTE PL Sbjct: 66 RGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPL-----ANIRN 120 Query: 431 KEXMXQIMFXTFNTPAMYVAIQAVLSCXRPVVTTGIVLDSGDGVSTPYPSTRGTHSPTA 607 KE + + + T N PA+ ++Q VL+ TTGIVL+ GDG++ P G P+A Sbjct: 121 KEKIAEYFYETLNVPALSFSLQPVLALYASARTTGIVLECGDGLTHSVPIYDGFSIPSA 179 Score = 68.1 bits (159), Expect = 1e-12 Identities = 30/53 (56%), Positives = 38/53 (71%) Frame = +3 Query: 93 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSXVGDEAQS 251 + +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD VG EAQ+ Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQN 64 Score = 29.9 bits (64), Expect = 0.46 Identities = 15/44 (34%), Positives = 25/44 (56%) Frame = +3 Query: 618 DLXGRDLTDTS*RSHRARVNRXITTAERGIVRDIXXKLCKXLSN 749 ++ GRD+TD R + +++AE+ IVR+I K C S+ Sbjct: 184 EIGGRDVTDYLQLQLRKSGHELVSSAEKEIVREIKEKCCYVASD 227 Score = 26.2 bits (55), Expect = 5.6 Identities = 8/15 (53%), Positives = 13/15 (86%) Frame = +1 Query: 565 HTVPIYEGYALPHGI 609 H+VPIY+G+++P I Sbjct: 166 HSVPIYDGFSIPSAI 180 >SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual Length = 390 Score = 92.3 bits (219), Expect = 8e-20 Identities = 43/108 (39%), Positives = 70/108 (64%) Frame = +2 Query: 254 RGILTLKYPIEHXIVTNWDDMEKIWXHTFXNELRVAPEEHPVLLTEAPLNPKAQKPXGGK 433 R +L +KYP+E+ I+ ++++M ++W +TF +L++ P +LLTE P+NP A + Sbjct: 62 RSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVA-----NR 116 Query: 434 EXMXQIMFXTFNTPAMYVAIQAVLSCXRPVVTTGIVLDSGDGVSTPYP 577 E M + MF + +YVAIQAVLS +++G+V+DSGDGV+ P Sbjct: 117 EKMCETMFERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGDGVTHIVP 164 Score = 54.4 bits (125), Expect = 2e-08 Identities = 29/59 (49%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Frame = +3 Query: 81 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSXVGDEAQS 251 E A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA++ Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEA 60 >SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces pombe|chr 1|||Manual Length = 427 Score = 87.4 bits (207), Expect = 2e-18 Identities = 50/116 (43%), Positives = 63/116 (54%), Gaps = 8/116 (6%) Frame = +2 Query: 266 TLKYPIEHXIVTNWDDMEKIWXHTFXNELRVAPEEHPVLLTEAPLNPKAQKPXGGKEXMX 445 +L YPI H + NWD ME+ W + LR PE+H LLTE PLNP +E Sbjct: 89 SLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPE-----NRENTA 143 Query: 446 QIMFXTFNTPAMYVAIQAVL----SCXRPVVT----TGIVLDSGDGVSTPYPSTRG 589 +IMF +FN +Y+A+QAVL S VT TG V+DSGDGV+ P G Sbjct: 144 EIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTHIIPVAEG 199 Score = 40.7 bits (91), Expect = 2e-04 Identities = 14/28 (50%), Positives = 23/28 (82%) Frame = +3 Query: 93 LVVDNGSGMCKAGFAGDDAPRAVFPSIV 176 +++DNG+G K G+AG+DAP VFP+++ Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVI 35 >SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe|chr 2|||Manual Length = 721 Score = 58.8 bits (136), Expect = 9e-10 Identities = 39/133 (29%), Positives = 66/133 (49%), Gaps = 6/133 (4%) Frame = +2 Query: 278 PIEHXIVTNWDDMEKIWXHTFXNELRVAPEEHPVLLTEAPLNPKAQKPXGGKEXMXQIMF 457 P E +++NWD ME++ +TF +L + EHP+ +TE NP + M +++F Sbjct: 86 PFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYV-----RSTMTELLF 139 Query: 458 XTFNTPAMYVAIQAVLSCXRPV--VTTGIVLDSGDGVSTPYPSTRG----THSPTASWSG 619 +N P++ I + S ++GIVL+ G+ S P G + + SW G Sbjct: 140 ELYNAPSVAYGIDGLFSFYHNTKPSSSGIVLNLGNAASHVIPVLNGERILSEAKRISWGG 199 Query: 620 LGRSRSHRYLMKI 658 S+S YL+K+ Sbjct: 200 ---SQSSSYLLKL 209 Score = 35.9 bits (79), Expect = 0.007 Identities = 15/32 (46%), Positives = 22/32 (68%) Frame = +3 Query: 93 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 188 LV+DNGS +AG+ G+ P+ VF ++V R R Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58 >SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces pombe|chr 2|||Manual Length = 433 Score = 46.8 bits (106), Expect = 4e-06 Identities = 27/97 (27%), Positives = 44/97 (45%) Frame = +2 Query: 263 LTLKYPIEHXIVTNWDDMEKIWXHTFXNELRVAPEEHPVLLTEAPLNPKAQKPXGGKEXM 442 + +K I + V NWD +W + +L+ P EHP+L+TE P + P + Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITE-PFD----NPPENRVKT 117 Query: 443 XQIMFXTFNTPAMYVAIQAVLSCXRPVVTTGIVLDSG 553 + MF + PA Y+A Q + T ++D G Sbjct: 118 LETMFESLRCPATYLAKQETCAAFASGKGTACLVDIG 154 Score = 40.3 bits (90), Expect = 3e-04 Identities = 16/34 (47%), Positives = 24/34 (70%) Frame = +3 Query: 78 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 179 +EV+A+V+D GS + GF+G+D P+ V PS G Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42 >SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Schizosaccharomyces pombe|chr 1|||Manual Length = 430 Score = 42.7 bits (96), Expect = 6e-05 Identities = 23/99 (23%), Positives = 46/99 (46%) Frame = +2 Query: 293 IVTNWDDMEKIWXHTFXNELRVAPEEHPVLLTEAPLNPKAQKPXGGKEXMXQIMFXTFNT 472 I+ +W+ W +L+V P E+ +++TE NP++ ++ + + F + Sbjct: 76 IIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSV-----RQQIMEAAFEQLHV 130 Query: 473 PAMYVAIQAVLSCXRPVVTTGIVLDSGDGVSTPYPSTRG 589 PA Y+ QAV +T +++D G ++ P G Sbjct: 131 PAFYLTKQAVCVAFANSKSTALIVDIGSDNASVTPVVDG 169 Score = 36.7 bits (81), Expect = 0.004 Identities = 14/34 (41%), Positives = 23/34 (67%) Frame = +3 Query: 78 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 179 EE+ +LV+D GS + G+AG+++P + PS G Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41 >SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 800 Score = 32.3 bits (70), Expect = 0.086 Identities = 23/67 (34%), Positives = 28/67 (41%), Gaps = 5/67 (7%) Frame = -1 Query: 259 TSLLCASS----PTXESFCPI-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTT 95 TS C +S PT S P+ PT+ P P N S P PL+TT Sbjct: 389 TSTSCTTSTSIPPTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATT 448 Query: 94 NAATSSS 74 N TS+S Sbjct: 449 NCTTSTS 455 >SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual Length = 309 Score = 27.9 bits (59), Expect = 1.8 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%) Frame = -1 Query: 238 SPTXESFC--PIPTITP*WRGLPTIEGNTARGASSPAKPAL 122 S T +SF P+PT P LPT NT + P+ PAL Sbjct: 64 SNTPKSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101 >SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr 1|||Manual Length = 1517 Score = 27.1 bits (57), Expect = 3.2 Identities = 14/38 (36%), Positives = 21/38 (55%) Frame = +3 Query: 138 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSXVGDEAQS 251 G+ PRA F ++ P H G+++ M KD G+E S Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMS 537 >SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|chr 1|||Manual Length = 488 Score = 25.8 bits (54), Expect = 7.5 Identities = 12/42 (28%), Positives = 21/42 (50%) Frame = -3 Query: 236 TYXRVLLSHTDHHALMAGPSDDRGEYGARSIISCETGLAHTG 111 TY +LL D + + G +DR + + + + C L H+G Sbjct: 226 TYPSLLLEEWDRYLMQNGSENDRPDSYSSTQLYCVLCLDHSG 267 >SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosaccharomyces pombe|chr 3|||Manual Length = 425 Score = 25.8 bits (54), Expect = 7.5 Identities = 10/18 (55%), Positives = 12/18 (66%) Frame = -2 Query: 132 NRPCTYRSHCLLPTRQLP 79 NRP YRSH + TR+ P Sbjct: 323 NRPSNYRSHSSMGTRRSP 340 >SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosaccharomyces pombe|chr 1|||Manual Length = 523 Score = 25.8 bits (54), Expect = 7.5 Identities = 18/92 (19%), Positives = 35/92 (38%) Frame = +2 Query: 278 PIEHXIVTNWDDMEKIWXHTFXNELRVAPEEHPVLLTEAPLNPKAQKPXGGKEXMXQIMF 457 PI+ V +W+ ++ W H + L+ P + + P +E Q F Sbjct: 113 PIQRGRVVDWEALKAFWKHLYSLLLK-DPNDTTFRYPVCLVIP-TYWSLYDRELATQFFF 170 Query: 458 XTFNTPAMYVAIQAVLSCXRPVVTTGIVLDSG 553 P +A + ++ + G+V+D G Sbjct: 171 EECQVPGFTIAYEPLMGLYAIGILHGLVIDIG 202 >SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyces pombe|chr 2|||Manual Length = 473 Score = 25.4 bits (53), Expect = 9.9 Identities = 11/27 (40%), Positives = 15/27 (55%) Frame = +3 Query: 555 TVSPHRTHLRGVRTPPRHPGLDLXGRD 635 T++ H +RG+ PRHP L G D Sbjct: 200 TLTGHIATVRGLAVSPRHPYLFSCGED 226 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,271,633 Number of Sequences: 5004 Number of extensions: 67502 Number of successful extensions: 205 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 172 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 195 length of database: 2,362,478 effective HSP length: 72 effective length of database: 2,002,190 effective search space used: 404442380 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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