Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0320
(826 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 183 2e-46
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 181 7e-46
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 180 1e-45
SB_56| Best HMM Match : Actin (HMM E-Value=0) 180 1e-45
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 169 2e-42
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 123 2e-28
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 95 6e-20
SB_54| Best HMM Match : Actin (HMM E-Value=0) 92 6e-19
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 76 3e-14
SB_3885| Best HMM Match : Actin (HMM E-Value=0.77) 64 2e-10
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 60 3e-09
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 55 8e-08
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 52 4e-07
SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 44 2e-04
SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24) 33 0.28
SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.65
SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.86
SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8) 31 0.86
SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_50768| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_34181| Best HMM Match : Extensin_2 (HMM E-Value=0.57) 29 4.6
SB_28437| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_26504| Best HMM Match : Ebp2 (HMM E-Value=2.7) 29 4.6
SB_14043| Best HMM Match : Extensin_1 (HMM E-Value=0.75) 29 4.6
SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
SB_13155| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 183 bits (445), Expect = 2e-46
Identities = 105/176 (59%), Positives = 114/176 (64%), Gaps = 2/176 (1%)
Frame = +2
Query: 251 QRGILTLKYPIEHXIVTNWDDMEKIWXHTFXNELRVAPEEHPVLLTEAPLNPKAQKPXGG 430
+RGILTLKYPIEH IVTNWDDMEKIW HTF NELRVAPEEHPVLLTEAPLNPKA
Sbjct: 61 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKA-----N 115
Query: 431 KEXMXQIMFXTFNTPAMYVAIQAVLSCXRPVVTTGIVLDSGDGVSTPYPSTRGTHSPTA- 607
+E M QIMF TFN+PAMYVAIQAVLS TTGIV+DSGDGV+ P G P A
Sbjct: 116 REKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAI 175
Query: 608 -SWSGLGRSRSHRYLMKISPXAGKSXXXXXXXXXXS*YQXEAV*VALEFXQEMATA 772
GR + YLMKI G S + + VAL+F QEMATA
Sbjct: 176 LRLDLAGRDLTD-YLMKILTERGYSFTTTAEREIVRDIKEKLAYVALDFEQEMATA 230
Score = 122 bits (294), Expect = 4e-28
Identities = 56/60 (93%), Positives = 59/60 (98%)
Frame = +3
Query: 75 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSXVGDEAQSK 254
+++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDS VGDEAQSK
Sbjct: 2 EDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 181 bits (440), Expect = 7e-46
Identities = 104/176 (59%), Positives = 113/176 (64%), Gaps = 2/176 (1%)
Frame = +2
Query: 251 QRGILTLKYPIEHXIVTNWDDMEKIWXHTFXNELRVAPEEHPVLLTEAPLNPKAQKPXGG 430
+RGILTLKYPIEH IVTNWDDMEKIW HTF NELRVAPEEHPVLLTEAPLNPKA
Sbjct: 62 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKA-----N 116
Query: 431 KEXMXQIMFXTFNTPAMYVAIQAVLSCXRPVVTTGIVLDSGDGVSTPYPSTRGTHSPTA- 607
+E M QIMF TFN+PAMYVAIQAVLS TTGIV+DSGDGV+ P G P A
Sbjct: 117 REKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAI 176
Query: 608 -SWSGLGRSRSHRYLMKISPXAGKSXXXXXXXXXXS*YQXEAV*VALEFXQEMATA 772
GR + YLMKI G S + + VAL+F QEM TA
Sbjct: 177 LRLDLAGRDLTD-YLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMTTA 231
Score = 129 bits (312), Expect = 2e-30
Identities = 59/62 (95%), Positives = 61/62 (98%)
Frame = +3
Query: 69 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSXVGDEAQ 248
MCD++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDS VGDEAQ
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 249 SK 254
SK
Sbjct: 61 SK 62
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 180 bits (439), Expect = 1e-45
Identities = 104/176 (59%), Positives = 113/176 (64%), Gaps = 2/176 (1%)
Frame = +2
Query: 251 QRGILTLKYPIEHXIVTNWDDMEKIWXHTFXNELRVAPEEHPVLLTEAPLNPKAQKPXGG 430
+RGILTLKYPIEH IVTNWDDMEKIW HTF NELRVAPEEHPVLLTEAPLNPKA
Sbjct: 62 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKA-----N 116
Query: 431 KEXMXQIMFXTFNTPAMYVAIQAVLSCXRPVVTTGIVLDSGDGVSTPYPSTRGTHSPTA- 607
+E M QIMF TFN+PAMYVAIQAVLS TTGIV+DSGDGV+ P G P A
Sbjct: 117 REKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAI 176
Query: 608 -SWSGLGRSRSHRYLMKISPXAGKSXXXXXXXXXXS*YQXEAV*VALEFXQEMATA 772
GR + YLMKI G S + + VAL+F QEM TA
Sbjct: 177 IRLDLAGRDLTD-YLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMETA 231
Score = 125 bits (301), Expect = 5e-29
Identities = 58/62 (93%), Positives = 60/62 (96%)
Frame = +3
Query: 69 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSXVGDEAQ 248
M D+E+AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDS VGDEAQ
Sbjct: 1 MEDDEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 249 SK 254
SK
Sbjct: 61 SK 62
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 180 bits (439), Expect = 1e-45
Identities = 104/176 (59%), Positives = 113/176 (64%), Gaps = 2/176 (1%)
Frame = +2
Query: 251 QRGILTLKYPIEHXIVTNWDDMEKIWXHTFXNELRVAPEEHPVLLTEAPLNPKAQKPXGG 430
+RGILTLKYPIEH IVTNWDDMEKIW HTF NELRVAPEEHPVLLTEAPLNPKA
Sbjct: 61 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKA-----N 115
Query: 431 KEXMXQIMFXTFNTPAMYVAIQAVLSCXRPVVTTGIVLDSGDGVSTPYPSTRGTHSPTA- 607
+E M QIMF TFN+PAMYVAIQAVLS TTGIV+DSGDGV+ P G P A
Sbjct: 116 REKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAI 175
Query: 608 -SWSGLGRSRSHRYLMKISPXAGKSXXXXXXXXXXS*YQXEAV*VALEFXQEMATA 772
GR + YLMKI G S + + VAL+F QEM TA
Sbjct: 176 LRLDLAGRDLTD-YLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMQTA 230
Score = 123 bits (297), Expect = 2e-28
Identities = 57/60 (95%), Positives = 59/60 (98%)
Frame = +3
Query: 75 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSXVGDEAQSK 254
++EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDS VGDEAQSK
Sbjct: 2 EDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 169 bits (411), Expect = 2e-42
Identities = 84/109 (77%), Positives = 88/109 (80%)
Frame = +2
Query: 251 QRGILTLKYPIEHXIVTNWDDMEKIWXHTFXNELRVAPEEHPVLLTEAPLNPKAQKPXGG 430
+RGILTLKYPIEH IVTNWDDMEKIW HTF NELRVAPEEHPVLLTEAPLNPKA
Sbjct: 62 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKA-----N 116
Query: 431 KEXMXQIMFXTFNTPAMYVAIQAVLSCXRPVVTTGIVLDSGDGVSTPYP 577
+E M QIMF TFN+PAMYVAIQAVLS TTGIV+DSGDGVS P
Sbjct: 117 REKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVP 165
Score = 125 bits (301), Expect = 5e-29
Identities = 56/62 (90%), Positives = 60/62 (96%)
Frame = +3
Query: 69 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSXVGDEAQ 248
M D+++AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDS VGDEAQ
Sbjct: 1 MADDDIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 249 SK 254
SK
Sbjct: 61 SK 62
Score = 29.9 bits (64), Expect = 2.6
Identities = 18/46 (39%), Positives = 21/46 (45%)
Frame = +3
Query: 687 TTAERGIVRDIXXKLCKXLSNSXRRWQRLIQEFPRGSLXEXSEGQV 824
TTAER IVRDI KLC + + Q E +GQV
Sbjct: 176 TTAEREIVRDIKEKLCYVALDFEQEMQTAASSSSIEKSYELPDGQV 221
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 123 bits (297), Expect = 2e-28
Identities = 56/60 (93%), Positives = 59/60 (98%)
Frame = +3
Query: 75 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSXVGDEAQSK 254
D++VAALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDS VGDEAQSK
Sbjct: 2 DDDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Score = 75.4 bits (177), Expect = 5e-14
Identities = 52/115 (45%), Positives = 61/115 (53%), Gaps = 2/115 (1%)
Frame = +2
Query: 434 EXMXQIMFXTFNTPAMYVAIQAVLSCXRPVVTTGIVLDSGDGVSTPYPSTRGTHSPTA-- 607
+ M +IMF TFN+PAMYVAIQAVLS TTGIV+DSGDGV+ P G P A
Sbjct: 80 DDMEKIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAII 139
Query: 608 SWSGLGRSRSHRYLMKISPXAGKSXXXXXXXXXXS*YQXEAV*VALEFXQEMATA 772
GR + YLMKI G S + + VAL+F QEM TA
Sbjct: 140 RLDLAGRDLTD-YLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMQTA 193
Score = 58.0 bits (134), Expect = 9e-09
Identities = 25/30 (83%), Positives = 26/30 (86%)
Frame = +2
Query: 251 QRGILTLKYPIEHXIVTNWDDMEKIWXHTF 340
+RGILTLKYPIEH IVTNWDDMEKI TF
Sbjct: 61 KRGILTLKYPIEHGIVTNWDDMEKIMFETF 90
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 95.1 bits (226), Expect = 6e-20
Identities = 53/141 (37%), Positives = 82/141 (58%), Gaps = 3/141 (2%)
Frame = +2
Query: 245 TEQRGILTLKYPIEHXIVTNWDDMEKIWXHTFX-NELRVAPEEHPVLLTEAPLNPKAQKP 421
++ R +L + YP+++ IV NWDDM+ +W +TF +++ + P VLLTE PLNP +
Sbjct: 62 SQLRYMLEVNYPMDNGIVRNWDDMKHVWDYTFGESKMNIDPRNTKVLLTEPPLNPMKNR- 120
Query: 422 XGGKEXMXQIMFXTFNTPAMYVAIQAVLSCXRPVVTTGIVLDSGDGVSTPYPSTRGTHSP 601
E M ++MF + +Y+AIQAVL+ + TG+V+DSGDGV+ P G P
Sbjct: 121 ----EKMIEVMFENYQFEGVYIAIQAVLTLYAQGLLTGVVIDSGDGVTHICPVYEGFALP 176
Query: 602 --TASWSGLGRSRSHRYLMKI 658
T GR + +YL+K+
Sbjct: 177 HLTRRLDIAGRDIT-KYLIKL 196
Score = 50.0 bits (114), Expect = 2e-06
Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Frame = +3
Query: 87 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSXVGDEA 245
+ +V DNG+G K G+AG + P +FPS+VGRP R + + KD VGDEA
Sbjct: 7 SVIVCDNGTGFVKCGYAGSNFPAHIFPSMVGRPIIRSSQKVGDIEVKDLMVGDEA 61
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 91.9 bits (218), Expect = 6e-19
Identities = 56/122 (45%), Positives = 70/122 (57%), Gaps = 2/122 (1%)
Frame = +2
Query: 320 KIWXHTFXNELRVAPEEHPVLLTEAPLNPKAQKPXGGKEXMXQIMFXTFNTPAMYVAIQA 499
K+W H F ++LRV E+ PVLLTEAPLNPK + E M Q+MF +FN P MYVA+QA
Sbjct: 2130 KMWEHAF-DQLRVRGEDFPVLLTEAPLNPKMNR-----ERMVQLMFESFNVPCMYVAVQA 2183
Query: 500 VLSCXRPVVTTGIVLDSGDGVSTPYPSTRGTHSPTASW--SGLGRSRSHRYLMKISPXAG 673
V++ TTG V D GDGVS P G P A+ GR +H YL ++ G
Sbjct: 2184 VMALYASGRTTGTVFDCGDGVSHTVPVYDGYWLPHATQRIDLAGRDLTH-YLQRLVTERG 2242
Query: 674 KS 679
S
Sbjct: 2243 YS 2244
Score = 59.7 bits (138), Expect = 3e-09
Identities = 23/34 (67%), Positives = 30/34 (88%)
Frame = +3
Query: 93 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 194
+V+DNGSG CKAG + D++PR VFP+IVGRPRH+
Sbjct: 2097 VVIDNGSGFCKAGLSTDESPRVVFPAIVGRPRHK 2130
Score = 30.3 bits (65), Expect = 2.0
Identities = 17/40 (42%), Positives = 22/40 (55%)
Frame = +3
Query: 615 LDLXGRDLTDTS*RSHRARVNRXITTAERGIVRDIXXKLC 734
+DL GRDLT R R +TAE+ I+RD+ LC
Sbjct: 2223 IDLAGRDLTHYLQRLVTERGYSFQSTAEQQIIRDLKETLC 2262
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 76.2 bits (179), Expect = 3e-14
Identities = 38/78 (48%), Positives = 50/78 (64%)
Frame = +2
Query: 368 EHPVLLTEAPLNPKAQKPXGGKEXMXQIMFXTFNTPAMYVAIQAVLSCXRPVVTTGIVLD 547
+HPVLLTEAPLNP+ + E ++ F TFN PA+++++QAVLS TTG+VLD
Sbjct: 126 QHPVLLTEAPLNPRRNR-----EKAAEVFFETFNVPALFISMQAVLSLYATGRTTGVVLD 180
Query: 548 SGDGVSTPYPSTRGTHSP 601
+GDGVS P G P
Sbjct: 181 AGDGVSHSVPIYEGFAMP 198
Score = 33.1 bits (72), Expect = 0.28
Identities = 11/16 (68%), Positives = 15/16 (93%)
Frame = +1
Query: 565 HTVPIYEGYALPHGIL 612
H+VPIYEG+A+PH I+
Sbjct: 187 HSVPIYEGFAMPHSIM 202
>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
Length = 152
Score = 63.7 bits (148), Expect = 2e-10
Identities = 45/107 (42%), Positives = 54/107 (50%), Gaps = 2/107 (1%)
Frame = +2
Query: 449 IMFXTFNTPAMYVAIQAVLSCXRPVVTTGIVLDSGDGVSTPYPSTRGTHSPTA--SWSGL 622
IMF FN+PA+YVAIQAVLS TTG+V DSGDGVS P G P A
Sbjct: 1 IMFEAFNSPAVYVAIQAVLSLYASGRTTGVVFDSGDGVSHNVPIYEGYALPHAILRLDLA 60
Query: 623 GRSRSHRYLMKISPXAGKSXXXXXXXXXXS*YQXEAV*VALEFXQEM 763
GR + YLMK+ G S + + VAL+F QE+
Sbjct: 61 GRDLTD-YLMKLMTERGYSFTTTAEREIVRDIKEKLCYVALDFYQEI 106
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 59.7 bits (138), Expect = 3e-09
Identities = 27/39 (69%), Positives = 29/39 (74%)
Frame = +3
Query: 78 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 194
E LV+D GS M K GFAGDDAP+ VFP IVGRPRHQ
Sbjct: 1354 EAPTPLVIDVGSHMWKVGFAGDDAPKGVFPPIVGRPRHQ 1392
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 54.8 bits (126), Expect = 8e-08
Identities = 27/100 (27%), Positives = 54/100 (54%)
Frame = +2
Query: 278 PIEHXIVTNWDDMEKIWXHTFXNELRVAPEEHPVLLTEAPLNPKAQKPXGGKEXMXQIMF 457
PI+ ++ +WD EKI + + ++ HP+L++EA N + + +E + ++MF
Sbjct: 3 PIKDGMIEDWDLFEKILDYIYSKNIKSDSALHPLLMSEAAWNTRIK-----REKLTELMF 57
Query: 458 XTFNTPAMYVAIQAVLSCXRPVVTTGIVLDSGDGVSTPYP 577
+N PA ++ +VL+ + G+V+DSG ++ P
Sbjct: 58 EKYNVPAFFLCKNSVLTAFANGRSNGLVIDSGATQTSAVP 97
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 52.4 bits (120), Expect = 4e-07
Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Frame = +3
Query: 63 FKMCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKD-SXV 233
FK+ A+V+DNG G+ K GFAGD PR + P++VG P+ +++G + KD
Sbjct: 693 FKLDSHYNRAIVLDNGCGISKIGFAGDRVPRIIQPAVVGNPQRFSMLIGDNVNVKDYKKY 752
Query: 234 GDEAQSK 254
GD A +K
Sbjct: 753 GDAAVAK 759
>SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 44.4 bits (100), Expect = 1e-04
Identities = 22/39 (56%), Positives = 28/39 (71%)
Frame = -3
Query: 191 MAGPSDDRGEYGARSIISCETGLAHTGAIVYYQRGNFLV 75
MA +DD GE G+ SI+S ETGLAHTGAI+ Q + +V
Sbjct: 1 MARSADDGGENGSGSIVSGETGLAHTGAIIDNQSCDIIV 39
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 43.6 bits (98), Expect = 2e-04
Identities = 18/38 (47%), Positives = 22/38 (57%)
Frame = +2
Query: 272 KYPIEHXIVTNWDDMEKIWXHTFXNELRVAPEEHPVLL 385
K+PI H IV +WD ME+ W LR PE+H LL
Sbjct: 299 KWPIRHAIVEDWDLMERFWEQCIFKYLRAEPEDHYFLL 336
>SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24)
Length = 766
Score = 33.1 bits (72), Expect = 0.28
Identities = 23/73 (31%), Positives = 38/73 (52%)
Frame = +2
Query: 323 IWXHTFXNELRVAPEEHPVLLTEAPLNPKAQKPXGGKEXMXQIMFXTFNTPAMYVAIQAV 502
I H F + L+V P +H V++T P N Q+ KE + +I+ F A+Y+ Q++
Sbjct: 513 ILEHAFLS-LKVDPVKHKVIMT-IPQNTGLQE----KEELVEILLGYFRVQAVYLQEQSI 566
Query: 503 LSCXRPVVTTGIV 541
L+ +GIV
Sbjct: 567 LAMYSYSAVSGIV 579
>SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 220
Score = 31.9 bits (69), Expect = 0.65
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Frame = +2
Query: 194 GRDGRYGTEGL-VRR*RGTEQRGILTLKYPIEHXIVTNWDDMEKIWXHTFXNELRVAP-- 364
GR G + GL V G+ + L+ P + +VT+++ E++ H F + P
Sbjct: 105 GRKGEPDSGGLAVGNDIGSVEMIRWALRTPFDRDVVTHYECQEQVLDHAFSHLGINTPGG 164
Query: 365 EEHPVLLTEAPLNP 406
HPV++TE NP
Sbjct: 165 VNHPVIMTEPVCNP 178
>SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 31.5 bits (68), Expect = 0.86
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -1
Query: 166 GNTARGASSPAKPALHIPEPLSTT 95
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8)
Length = 170
Score = 31.5 bits (68), Expect = 0.86
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -1
Query: 166 GNTARGASSPAKPALHIPEPLSTT 95
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3176
Score = 31.1 bits (67), Expect = 1.1
Identities = 26/80 (32%), Positives = 39/80 (48%)
Frame = -2
Query: 318 SMSSQLVTIXCSMGYLRVRIPLCSVPRHLRTSPSVPYRPSRPDGGAFRRSRGIRREEHHL 139
+++SQ VT M R +PL S P H++ SP V + P PD + R E HH
Sbjct: 792 ALTSQQVTSSHDMP--RTSMPLVSYPPHMKKSPFVVHHP--PDSAS--RHGNQAPEAHH- 844
Query: 138 LRNRPCTYRSHCLLPTRQLP 79
+ P +Y+S +R+ P
Sbjct: 845 --HEPGSYKSPHSEGSRRTP 862
>SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 749
Score = 30.3 bits (65), Expect = 2.0
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -1
Query: 166 GNTARGASSPAKPALHIPEPLSTT 95
GNT R PAKP+L++P P S T
Sbjct: 540 GNTNRRTRIPAKPSLNLPSPPSKT 563
>SB_50768| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1069
Score = 29.1 bits (62), Expect = 4.6
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +2
Query: 563 STPYPSTRGTHSPTASWSGLGRSRS 637
+ P PST+G+ SPT S S LG + S
Sbjct: 819 TAPTPSTQGSQSPTGSASTLGENPS 843
>SB_34181| Best HMM Match : Extensin_2 (HMM E-Value=0.57)
Length = 1121
Score = 29.1 bits (62), Expect = 4.6
Identities = 16/45 (35%), Positives = 19/45 (42%)
Frame = +3
Query: 360 PPRNTPSCSLRLPSTPRPKNPXGEKRX*XRSCSXHSTRPPCTSPS 494
P TP+ + PS PRP NP K S +S PP S
Sbjct: 851 PTNPTPAHAASKPSNPRPSNPT-PKHAMGEGVSDNSAEPPSPGES 894
>SB_28437| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 126
Score = 29.1 bits (62), Expect = 4.6
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = +2
Query: 491 IQAVLSCXRPVVTTGIVLDSGDGVSTPYPSTRGTHSPTASWSGLGRSRSHR 643
+Q + V VL + ++ P S +GTH P ASW +R+ R
Sbjct: 24 VQTTNALVNDVSDIEFVLWTNHCIALPRSSKKGTHPPFASWRNSEEARTDR 74
>SB_26504| Best HMM Match : Ebp2 (HMM E-Value=2.7)
Length = 550
Score = 29.1 bits (62), Expect = 4.6
Identities = 21/95 (22%), Positives = 38/95 (40%)
Frame = +2
Query: 395 PLNPKAQKPXGGKEXMXQIMFXTFNTPAMYVAIQAVLSCXRPVVTTGIVLDSGDGVSTPY 574
P+N + P G KE +++ F++ I +C RP +G + G +
Sbjct: 89 PVNNQVVNPSGSKEAKFRVLQKRFSSLGAIGVISESDACDRPSARSGEQRTTASGKGRNF 148
Query: 575 PSTRGTHSPTASWSGLGRSRSHRYLMKISPXAGKS 679
P+ SP+ + RS +L + S G +
Sbjct: 149 PA----QSPSTARESRVRSEVSLFLCRQSRIQGSN 179
>SB_14043| Best HMM Match : Extensin_1 (HMM E-Value=0.75)
Length = 568
Score = 29.1 bits (62), Expect = 4.6
Identities = 18/74 (24%), Positives = 24/74 (32%), Gaps = 2/74 (2%)
Frame = +3
Query: 360 PPRNTPSCSLRLPSTPRPKNPXGEKRX*XRSCSX--HSTRPPCTSPSKXXXXXXXXXXXX 533
P P + + PR P K + C+ H+T+PP T P
Sbjct: 101 PKTTKPHTNKPYTTKPRTTKPRTTKPHTTKPCTTKPHTTKPPTTKPQTTKPHTTKPRTTK 160
Query: 534 XXXWTPATVSPHRT 575
P T PH T
Sbjct: 161 PPTTKPHTTKPHTT 174
>SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 28.3 bits (60), Expect = 8.0
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -1
Query: 166 GNTARGASSPAKPALHIPEPLSTT 95
GNT R AKPAL++P P S T
Sbjct: 40 GNTNRRTRIQAKPALNLPSPPSKT 63
>SB_13155| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 357
Score = 28.3 bits (60), Expect = 8.0
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +3
Query: 354 VSPPRNTPSCSLRLPSTPRPKNPXGEKR 437
VS + TPS S LP TP P +KR
Sbjct: 11 VSRAKKTPSPSTLLPKTPAKSRPDSQKR 38
>SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 635
Score = 28.3 bits (60), Expect = 8.0
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -1
Query: 166 GNTARGASSPAKPALHIPEPLSTT 95
GNT R PAKP L IP P + T
Sbjct: 68 GNTNRRTRIPAKPTLTIPSPPTKT 91
>SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3142
Score = 28.3 bits (60), Expect = 8.0
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = -3
Query: 257 LFALCLVTYXRVLLSHTDHHALMAGPSDDRGEYGARSIISCETGLAHT 114
L LC T ++LSH + H L ++G R +SCET L T
Sbjct: 854 LTCLCCKTMEHIVLSHLNKH-LSRFNILSNAQHGFRQGLSCETQLVLT 900
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,701,546
Number of Sequences: 59808
Number of extensions: 621791
Number of successful extensions: 1798
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1760
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2311562737
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -