Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0319
(716 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 119 4e-28
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 67 2e-12
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 60 3e-10
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 51 1e-07
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 40 3e-04
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 37 0.003
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 36 0.004
SPBC3B9.07c |rpa43|rpa21|DNA-directed RNA polymerase I complex s... 29 0.66
SPCC1442.07c |||ubiquitin/metalloprotease fusion protein|Schizos... 27 2.0
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 3.5
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 4.7
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 26 4.7
SPCC16C4.17 |mug123||meiotically upregulated gene Mug123|Schizos... 25 8.2
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 119 bits (287), Expect = 4e-28
Identities = 51/55 (92%), Positives = 52/55 (94%)
Frame = +2
Query: 248 GTEDSYVGDEAQSXRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 412
G +DSYVGDEAQS RGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP
Sbjct: 48 GQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHP 102
Score = 105 bits (252), Expect = 6e-24
Identities = 67/144 (46%), Positives = 79/144 (54%), Gaps = 2/144 (1%)
Frame = +3
Query: 111 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG--VMVGMGQRTLM*EMRHR 284
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G V +G + E + +
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Query: 285 AXXXXXXXXXXXXXXXXLTGMTWRRFGIIPSTMSCVSPPRNTQSXWXPFSPTEAPLNPKX 464
M + + V+P + P TEAPLNPK
Sbjct: 62 RGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELR-VAPEEH------PCLLTEAPLNPKS 114
Query: 465 NREKMTQIHVLXIQQPAMYVAIQS 536
NREKMTQI PA YVAIQ+
Sbjct: 115 NREKMTQIIFETFNAPAFYVAIQA 138
Score = 85.0 bits (201), Expect = 1e-17
Identities = 43/65 (66%), Positives = 48/65 (73%)
Frame = +1
Query: 490 MFXTFNSPPCTSPSKAVLSLYASGRTTGIVLDSGDGVFHTVXIYVGYALXPRHLRLEXXG 669
+F TFN+P +AVLSLYASGRTTGIVLDSGDGV HTV IY GYAL +RL+ G
Sbjct: 123 IFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAG 182
Query: 670 RXLTD 684
R LTD
Sbjct: 183 RDLTD 187
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 67.3 bits (157), Expect = 2e-12
Identities = 28/57 (49%), Positives = 41/57 (71%), Gaps = 1/57 (1%)
Frame = +2
Query: 254 EDSYVGDEAQSXRGILTLKYPIEHGIVTNWDDMEKIWHHTFYN-ELRVAPEEHPVPL 421
+D +VG EAQ+ RG+L ++ PIE GI+ NW DME+IW + + + +L PEEHP+ L
Sbjct: 54 KDMFVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLL 110
Score = 62.1 bits (144), Expect = 8e-11
Identities = 31/76 (40%), Positives = 45/76 (59%)
Frame = +1
Query: 487 FMFXTFNSPPCTSPSKAVLSLYASGRTTGIVLDSGDGVFHTVXIYVGYALXPRHLRLEXX 666
+ + T N P + + VL+LYAS RTTGIVL+ GDG+ H+V IY G+++ + E
Sbjct: 127 YFYETLNVPALSFSLQPVLALYASARTTGIVLECGDGLTHSVPIYDGFSIPSAIQQEEIG 186
Query: 667 GRXLTD*LHXDPHEGG 714
GR +TD L + G
Sbjct: 187 GRDVTDYLQLQLRKSG 202
Score = 55.6 bits (128), Expect = 7e-09
Identities = 23/45 (51%), Positives = 32/45 (71%)
Frame = +3
Query: 129 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQRTL 263
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM Q+ +
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDM 56
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 60.1 bits (139), Expect = 3e-10
Identities = 22/63 (34%), Positives = 43/63 (68%)
Frame = +2
Query: 233 RDGRYGTEDSYVGDEAQSXRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 412
+ G +D VGDEA++ R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P
Sbjct: 43 KTGNVQIKDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRK 102
Query: 413 VPL 421
+ L
Sbjct: 103 ILL 105
Score = 50.0 bits (114), Expect = 3e-07
Identities = 25/50 (50%), Positives = 32/50 (64%)
Frame = +1
Query: 532 KAVLSLYASGRTTGIVLDSGDGVFHTVXIYVGYALXPRHLRLEXXGRXLT 681
+AVLSLYA G ++G+V+DSGDGV H V +Y L RL+ GR T
Sbjct: 137 QAVLSLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLVGRLDVAGRDAT 186
Score = 48.0 bits (109), Expect = 1e-06
Identities = 21/35 (60%), Positives = 26/35 (74%)
Frame = +3
Query: 117 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 221
E A +V+DNG+G K G+A D+ PR FPSIVGRP
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRP 36
Score = 30.3 bits (65), Expect = 0.29
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +3
Query: 438 TEAPLNPKXNREKMTQIHVLXIQQPAMYVAIQS 536
TE P+NP NREKM + +YVAIQ+
Sbjct: 106 TEPPMNPVANREKMCETMFERYGFGGVYVAIQA 138
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 51.2 bits (117), Expect = 1e-07
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +2
Query: 257 DSYVGDEAQSXRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH 409
D ++G++A +L YPI HG + NWD ME+ W + + LR PE+H
Sbjct: 73 DFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDH 124
Score = 40.7 bits (91), Expect = 2e-04
Identities = 14/28 (50%), Positives = 23/28 (82%)
Frame = +3
Query: 129 LVVDNGSGMCKAGFAGDDAPRAVFPSIV 212
+++DNG+G K G+AG+DAP VFP+++
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVI 35
Score = 37.1 bits (82), Expect = 0.003
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
Frame = +1
Query: 490 MFXTFNSPPCTSPSKAVLSLYASGRT--------TGIVLDSGDGVFHTVXIYVGYALXPR 645
MF +FN +AVL+L AS + TG V+DSGDGV H + + GY +
Sbjct: 146 MFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTHIIPVAEGYVIGSS 205
Query: 646 HLRLEXXGRXLT 681
+ GR +T
Sbjct: 206 IKTMPLAGRDVT 217
Score = 31.1 bits (67), Expect = 0.16
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +3
Query: 429 FSPTEAPLNPKXNREKMTQIHVLXIQQPAMYVAIQS 536
F TE PLNP NRE +I +Y+A+Q+
Sbjct: 126 FLLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQA 161
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 40.3 bits (90), Expect = 3e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +3
Query: 114 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 215
+EV+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
Score = 34.7 bits (76), Expect = 0.013
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 299 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV 415
+ +K I +G V NWD +W + +L+ P EHP+
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPI 101
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 36.7 bits (81), Expect = 0.003
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +3
Query: 114 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 215
EE+ +LV+D GS + G+AG+++P + PS G
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41
Score = 27.1 bits (57), Expect = 2.7
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = +2
Query: 257 DSYVGDEAQSXRGI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH 409
+ YV DE Q I + +K +GI+ +W+ W +L+V P E+
Sbjct: 50 NKYVVDELQIHAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEY 102
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 36.3 bits (80), Expect = 0.004
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = +2
Query: 233 RDGRYGTEDSYVGDEAQSXRGILTL-KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH 409
RD + + VG++ G ++ + P E +++NWD ME++ +TF +L + EH
Sbjct: 58 RDRKLSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEH 116
Query: 410 PV 415
P+
Sbjct: 117 PI 118
Score = 35.9 bits (79), Expect = 0.006
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +3
Query: 129 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 224
LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
>SPBC3B9.07c |rpa43|rpa21|DNA-directed RNA polymerase I complex
subunit Rpa43|Schizosaccharomyces pombe|chr 2|||Manual
Length = 173
Score = 29.1 bits (62), Expect = 0.66
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 469 LLXLGLRGASVGEKGXQXDWVFLGGDT 389
LL LG+ AS+ K DW+F+ DT
Sbjct: 103 LLILGIFNASIPRKSIPKDWIFIEPDT 129
>SPCC1442.07c |||ubiquitin/metalloprotease fusion
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 282
Score = 27.5 bits (58), Expect = 2.0
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -1
Query: 284 SVPHLLHKSPLSHTDHHALMAGPSHDRGEH 195
+VP L P HT H + G +H++G H
Sbjct: 148 TVPLLSEMDPAEHTRHDSKTLGLNHNQGAH 177
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.6 bits (56), Expect = 3.5
Identities = 15/45 (33%), Positives = 18/45 (40%)
Frame = -2
Query: 244 PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 110
PT+ P P N S P PL+TTN TS+S
Sbjct: 411 PTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 4.7
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 250 PIPTITP*WRGLPTIEGNTARGASSPAKPAL 158
P+PT P LPT NT + P+ PAL
Sbjct: 74 PVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 26.2 bits (55), Expect = 4.7
Identities = 18/65 (27%), Positives = 26/65 (40%)
Frame = +1
Query: 487 FMFXTFNSPPCTSPSKAVLSLYASGRTTGIVLDSGDGVFHTVXIYVGYALXPRHLRLEXX 666
F F P T + ++ LYA G G+V+D G I G + +L
Sbjct: 168 FFFEECQVPGFTIAYEPLMGLYAIGILHGLVIDIGYEKTDITPILDGQIIFTATQQLPLG 227
Query: 667 GRXLT 681
GR +T
Sbjct: 228 GRYMT 232
Score = 25.8 bits (54), Expect = 6.2
Identities = 7/21 (33%), Positives = 13/21 (61%)
Frame = +2
Query: 314 PIEHGIVTNWDDMEKIWHHTF 376
PI+ G V +W+ ++ W H +
Sbjct: 113 PIQRGRVVDWEALKAFWKHLY 133
>SPCC16C4.17 |mug123||meiotically upregulated gene
Mug123|Schizosaccharomyces pombe|chr 3|||Manual
Length = 235
Score = 25.4 bits (53), Expect = 8.2
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = -3
Query: 276 SSPT*ESSVPYRPSRPDGGAFPRSRGTRREEHHLLRNRPCTYRSHCLLPTRQLL 115
SSP+ +SS S G RSR + H + RP + S + P +L
Sbjct: 61 SSPSIKSSSQNGKSSSKGLGGMRSRVFSSQHHGVYHTRPASLHSRTMAPQHTIL 114
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,766,727
Number of Sequences: 5004
Number of extensions: 56842
Number of successful extensions: 146
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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