Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0319
(716 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 123 1e-28
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 123 1e-28
SB_56| Best HMM Match : Actin (HMM E-Value=0) 123 1e-28
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 123 1e-28
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 123 1e-28
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 103 2e-22
SB_3885| Best HMM Match : Actin (HMM E-Value=0.77) 83 2e-16
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 70 2e-12
SB_54| Best HMM Match : Actin (HMM E-Value=0) 68 9e-12
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 60 2e-09
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 56 3e-08
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 51 8e-07
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 51 8e-07
SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 5e-04
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 40 0.002
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 36 0.033
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 35 0.057
SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.71
SB_27518| Best HMM Match : RWD (HMM E-Value=0.015) 31 0.71
SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8) 31 0.71
SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_58989| Best HMM Match : RVT_1 (HMM E-Value=0) 29 3.8
SB_18097| Best HMM Match : NadA (HMM E-Value=2.2) 29 3.8
SB_47621| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_21074| Best HMM Match : NadA (HMM E-Value=2) 29 5.0
SB_15522| Best HMM Match : DUF590 (HMM E-Value=5.8) 29 5.0
SB_38460| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_38372| Best HMM Match : RVT_1 (HMM E-Value=0) 29 5.0
SB_4310| Best HMM Match : RVT_1 (HMM E-Value=5e-28) 29 5.0
SB_2458| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 123 bits (297), Expect = 1e-28
Identities = 54/58 (93%), Positives = 55/58 (94%)
Frame = +2
Query: 248 GTEDSYVGDEAQSXRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVPL 421
G +DSYVGDEAQS RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV L
Sbjct: 49 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 106
Score = 111 bits (268), Expect = 4e-25
Identities = 71/146 (48%), Positives = 82/146 (56%), Gaps = 2/146 (1%)
Frame = +3
Query: 105 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG--VMVGMGQRTLM*EMR 278
M D+E+AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG V +G + E +
Sbjct: 1 MEDDEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 279 HRAXXXXXXXXXXXXXXXXLTGMTWRRFGIIPSTMSCVSPPRNTQSXWXPFSPTEAPLNP 458
+ M + + V+P + P TEAPLNP
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELR-VAPEEH------PVLLTEAPLNP 113
Query: 459 KXNREKMTQIHVLXIQQPAMYVAIQS 536
K NREKMTQI PAMYVAIQ+
Sbjct: 114 KANREKMTQIMFETFNSPAMYVAIQA 139
Score = 87.4 bits (207), Expect = 1e-17
Identities = 44/65 (67%), Positives = 48/65 (73%)
Frame = +1
Query: 490 MFXTFNSPPCTSPSKAVLSLYASGRTTGIVLDSGDGVFHTVXIYVGYALXPRHLRLEXXG 669
MF TFNSP +AVLSLYASGRTTGIV+DSGDGV HTV IY GYAL +RL+ G
Sbjct: 124 MFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAIIRLDLAG 183
Query: 670 RXLTD 684
R LTD
Sbjct: 184 RDLTD 188
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 123 bits (297), Expect = 1e-28
Identities = 54/58 (93%), Positives = 55/58 (94%)
Frame = +2
Query: 248 GTEDSYVGDEAQSXRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVPL 421
G +DSYVGDEAQS RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV L
Sbjct: 48 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 105
Score = 109 bits (261), Expect = 3e-24
Identities = 69/144 (47%), Positives = 81/144 (56%), Gaps = 2/144 (1%)
Frame = +3
Query: 111 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG--VMVGMGQRTLM*EMRHR 284
+++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG V +G + E + +
Sbjct: 2 EDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 285 AXXXXXXXXXXXXXXXXLTGMTWRRFGIIPSTMSCVSPPRNTQSXWXPFSPTEAPLNPKX 464
M + + V+P + P TEAPLNPK
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELR-VAPEEH------PVLLTEAPLNPKA 114
Query: 465 NREKMTQIHVLXIQQPAMYVAIQS 536
NREKMTQI PAMYVAIQ+
Sbjct: 115 NREKMTQIMFETFNSPAMYVAIQA 138
Score = 88.2 bits (209), Expect = 6e-18
Identities = 45/65 (69%), Positives = 48/65 (73%)
Frame = +1
Query: 490 MFXTFNSPPCTSPSKAVLSLYASGRTTGIVLDSGDGVFHTVXIYVGYALXPRHLRLEXXG 669
MF TFNSP +AVLSLYASGRTTGIV+DSGDGV HTV IY GYAL LRL+ G
Sbjct: 123 MFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAG 182
Query: 670 RXLTD 684
R LTD
Sbjct: 183 RDLTD 187
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 123 bits (297), Expect = 1e-28
Identities = 54/58 (93%), Positives = 55/58 (94%)
Frame = +2
Query: 248 GTEDSYVGDEAQSXRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVPL 421
G +DSYVGDEAQS RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV L
Sbjct: 48 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 105
Score = 110 bits (264), Expect = 1e-24
Identities = 70/144 (48%), Positives = 81/144 (56%), Gaps = 2/144 (1%)
Frame = +3
Query: 111 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG--VMVGMGQRTLM*EMRHR 284
++EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG V +G + E + +
Sbjct: 2 EDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 285 AXXXXXXXXXXXXXXXXLTGMTWRRFGIIPSTMSCVSPPRNTQSXWXPFSPTEAPLNPKX 464
M + + V+P + P TEAPLNPK
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELR-VAPEEH------PVLLTEAPLNPKA 114
Query: 465 NREKMTQIHVLXIQQPAMYVAIQS 536
NREKMTQI PAMYVAIQ+
Sbjct: 115 NREKMTQIMFETFNSPAMYVAIQA 138
Score = 88.2 bits (209), Expect = 6e-18
Identities = 45/65 (69%), Positives = 48/65 (73%)
Frame = +1
Query: 490 MFXTFNSPPCTSPSKAVLSLYASGRTTGIVLDSGDGVFHTVXIYVGYALXPRHLRLEXXG 669
MF TFNSP +AVLSLYASGRTTGIV+DSGDGV HTV IY GYAL LRL+ G
Sbjct: 123 MFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAG 182
Query: 670 RXLTD 684
R LTD
Sbjct: 183 RDLTD 187
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 123 bits (297), Expect = 1e-28
Identities = 54/58 (93%), Positives = 55/58 (94%)
Frame = +2
Query: 248 GTEDSYVGDEAQSXRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVPL 421
G +DSYVGDEAQS RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV L
Sbjct: 49 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 106
Score = 116 bits (279), Expect = 2e-26
Identities = 72/146 (49%), Positives = 83/146 (56%), Gaps = 2/146 (1%)
Frame = +3
Query: 105 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG--VMVGMGQRTLM*EMR 278
MCD++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG V +G + E +
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 279 HRAXXXXXXXXXXXXXXXXLTGMTWRRFGIIPSTMSCVSPPRNTQSXWXPFSPTEAPLNP 458
+ M + + V+P + P TEAPLNP
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELR-VAPEEH------PVLLTEAPLNP 113
Query: 459 KXNREKMTQIHVLXIQQPAMYVAIQS 536
K NREKMTQI PAMYVAIQ+
Sbjct: 114 KANREKMTQIMFETFNSPAMYVAIQA 139
Score = 88.2 bits (209), Expect = 6e-18
Identities = 45/65 (69%), Positives = 48/65 (73%)
Frame = +1
Query: 490 MFXTFNSPPCTSPSKAVLSLYASGRTTGIVLDSGDGVFHTVXIYVGYALXPRHLRLEXXG 669
MF TFNSP +AVLSLYASGRTTGIV+DSGDGV HTV IY GYAL LRL+ G
Sbjct: 124 MFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAG 183
Query: 670 RXLTD 684
R LTD
Sbjct: 184 RDLTD 188
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 123 bits (297), Expect = 1e-28
Identities = 54/58 (93%), Positives = 55/58 (94%)
Frame = +2
Query: 248 GTEDSYVGDEAQSXRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVPL 421
G +DSYVGDEAQS RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV L
Sbjct: 49 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 106
Score = 111 bits (268), Expect = 4e-25
Identities = 69/146 (47%), Positives = 82/146 (56%), Gaps = 2/146 (1%)
Frame = +3
Query: 105 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG--VMVGMGQRTLM*EMR 278
M D+++AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG V +G + E +
Sbjct: 1 MADDDIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 279 HRAXXXXXXXXXXXXXXXXLTGMTWRRFGIIPSTMSCVSPPRNTQSXWXPFSPTEAPLNP 458
+ M + + V+P + P TEAPLNP
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELR-VAPEEH------PVLLTEAPLNP 113
Query: 459 KXNREKMTQIHVLXIQQPAMYVAIQS 536
K NREKMTQI PAMYVAIQ+
Sbjct: 114 KANREKMTQIMFETFNSPAMYVAIQA 139
Score = 68.1 bits (159), Expect = 7e-12
Identities = 33/44 (75%), Positives = 35/44 (79%)
Frame = +1
Query: 490 MFXTFNSPPCTSPSKAVLSLYASGRTTGIVLDSGDGVFHTVXIY 621
MF TFNSP +AVLSLYASGRTTGIV+DSGDGV HTV IY
Sbjct: 124 MFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIY 167
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 103 bits (246), Expect = 2e-22
Identities = 45/49 (91%), Positives = 49/49 (100%)
Frame = +3
Query: 111 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQR 257
D++VAALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQ+
Sbjct: 2 DDDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQK 50
Score = 87.4 bits (207), Expect = 1e-17
Identities = 44/65 (67%), Positives = 48/65 (73%)
Frame = +1
Query: 490 MFXTFNSPPCTSPSKAVLSLYASGRTTGIVLDSGDGVFHTVXIYVGYALXPRHLRLEXXG 669
MF TFNSP +AVLSLYASGRTTGIV+DSGDGV HTV IY GYAL +RL+ G
Sbjct: 86 MFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAIIRLDLAG 145
Query: 670 RXLTD 684
R LTD
Sbjct: 146 RDLTD 150
Score = 83.0 bits (196), Expect = 2e-16
Identities = 37/43 (86%), Positives = 38/43 (88%)
Frame = +2
Query: 248 GTEDSYVGDEAQSXRGILTLKYPIEHGIVTNWDDMEKIWHHTF 376
G +DSYVGDEAQS RGILTLKYPIEHGIVTNWDDMEKI TF
Sbjct: 48 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIMFETF 90
>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
Length = 152
Score = 83.0 bits (196), Expect = 2e-16
Identities = 42/65 (64%), Positives = 45/65 (69%)
Frame = +1
Query: 490 MFXTFNSPPCTSPSKAVLSLYASGRTTGIVLDSGDGVFHTVXIYVGYALXPRHLRLEXXG 669
MF FNSP +AVLSLYASGRTTG+V DSGDGV H V IY GYAL LRL+ G
Sbjct: 2 MFEAFNSPAVYVAIQAVLSLYASGRTTGVVFDSGDGVSHNVPIYEGYALPHAILRLDLAG 61
Query: 670 RXLTD 684
R LTD
Sbjct: 62 RDLTD 66
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 70.1 bits (164), Expect = 2e-12
Identities = 33/63 (52%), Positives = 44/63 (69%)
Frame = +1
Query: 493 FXTFNSPPCTSPSKAVLSLYASGRTTGIVLDSGDGVFHTVXIYVGYALXPRHLRLEXXGR 672
F TFN P +AVLSLYA+GRTTG+VLD+GDGV H+V IY G+A+ +R + GR
Sbjct: 150 FETFNVPALFISMQAVLSLYATGRTTGVVLDAGDGVSHSVPIYEGFAMPHSIMRTDIAGR 209
Query: 673 XLT 681
++
Sbjct: 210 DVS 212
Score = 37.9 bits (84), Expect = 0.008
Identities = 15/37 (40%), Positives = 24/37 (64%)
Frame = +3
Query: 426 PFSPTEAPLNPKXNREKMTQIHVLXIQQPAMYVAIQS 536
P TEAPLNP+ NREK ++ PA+++++Q+
Sbjct: 128 PVLLTEAPLNPRRNREKAAEVFFETFNVPALFISMQA 164
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 67.7 bits (158), Expect = 9e-12
Identities = 34/64 (53%), Positives = 41/64 (64%)
Frame = +1
Query: 490 MFXTFNSPPCTSPSKAVLSLYASGRTTGIVLDSGDGVFHTVXIYVGYALXPRHLRLEXXG 669
MF +FN P +AV++LYASGRTTG V D GDGV HTV +Y GY L R++ G
Sbjct: 2168 MFESFNVPCMYVAVQAVMALYASGRTTGTVFDCGDGVSHTVPVYDGYWLPHATQRIDLAG 2227
Query: 670 RXLT 681
R LT
Sbjct: 2228 RDLT 2231
Score = 59.7 bits (138), Expect = 2e-09
Identities = 23/34 (67%), Positives = 30/34 (88%)
Frame = +3
Query: 129 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 230
+V+DNGSG CKAG + D++PR VFP+IVGRPRH+
Sbjct: 2097 VVIDNGSGFCKAGLSTDESPRVVFPAIVGRPRHK 2130
Score = 44.4 bits (100), Expect = 9e-05
Identities = 20/37 (54%), Positives = 24/37 (64%)
Frame = +3
Query: 426 PFSPTEAPLNPKXNREKMTQIHVLXIQQPAMYVAIQS 536
P TEAPLNPK NRE+M Q+ P MYVA+Q+
Sbjct: 2147 PVLLTEAPLNPKMNRERMVQLMFESFNVPCMYVAVQA 2183
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 59.7 bits (138), Expect = 2e-09
Identities = 27/39 (69%), Positives = 29/39 (74%)
Frame = +3
Query: 114 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 230
E LV+D GS M K GFAGDDAP+ VFP IVGRPRHQ
Sbjct: 1354 EAPTPLVIDVGSHMWKVGFAGDDAPKGVFPPIVGRPRHQ 1392
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 56.0 bits (129), Expect = 3e-08
Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Frame = +2
Query: 227 SGRDGRYGTEDSYVGDEAQSXRGILTLKYPIEHGIVTNWDDMEKIWHHTF-YNELRVAPE 403
S + G +D VGDEA R +L + YP+++GIV NWDDM+ +W +TF +++ + P
Sbjct: 44 SQKVGDIEVKDLMVGDEASQLRYMLEVNYPMDNGIVRNWDDMKHVWDYTFGESKMNIDPR 103
Query: 404 EHPVPL 421
V L
Sbjct: 104 NTKVLL 109
Score = 56.0 bits (129), Expect = 3e-08
Identities = 26/50 (52%), Positives = 34/50 (68%)
Frame = +1
Query: 532 KAVLSLYASGRTTGIVLDSGDGVFHTVXIYVGYALXPRHLRLEXXGRXLT 681
+AVL+LYA G TG+V+DSGDGV H +Y G+AL RL+ GR +T
Sbjct: 141 QAVLTLYAQGLLTGVVIDSGDGVTHICPVYEGFALPHLTRRLDIAGRDIT 190
Score = 53.6 bits (123), Expect = 2e-07
Identities = 45/145 (31%), Positives = 67/145 (46%), Gaps = 7/145 (4%)
Frame = +3
Query: 123 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQRTLM-----*EMRH 281
+ +V DNG+G K G+AG + P +FPS+VGRP R + + + LM ++R+
Sbjct: 7 SVIVCDNGTGFVKCGYAGSNFPAHIFPSMVGRPIIRSSQKVGDIEVKDLMVGDEASQLRY 66
Query: 282 RAXXXXXXXXXXXXXXXXLTGMTWRRFGIIPSTMSCVSPPRNTQSXWXPFSPTEAPLNPK 461
+ + FG S M+ PRNT+ TE PLNP
Sbjct: 67 MLEVNYPMDNGIVRNWDDMKHVWDYTFG--ESKMNI--DPRNTKVLL-----TEPPLNPM 117
Query: 462 XNREKMTQIHVLXIQQPAMYVAIQS 536
NREKM ++ Q +Y+AIQ+
Sbjct: 118 KNREKMIEVMFENYQFEGVYIAIQA 142
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 51.2 bits (117), Expect = 8e-07
Identities = 21/49 (42%), Positives = 32/49 (65%)
Frame = +3
Query: 99 FKMCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG 245
FK+ A+V+DNG G+ K GFAGD PR + P++VG P+ +++G
Sbjct: 693 FKLDSHYNRAIVLDNGCGISKIGFAGDRVPRIIQPAVVGNPQRFSMLIG 741
Score = 38.3 bits (85), Expect = 0.006
Identities = 21/48 (43%), Positives = 24/48 (50%)
Frame = +1
Query: 541 LSLYASGRTTGIVLDSGDGVFHTVXIYVGYALXPRHLRLEXXGRXLTD 684
LSLYASG T G+ L SG IY G+ L LE G LT+
Sbjct: 770 LSLYASGMTLGVCLSSGFSCTQAAVIYEGHTLNHTLQTLEIGGHHLTE 817
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 51.2 bits (117), Expect = 8e-07
Identities = 22/51 (43%), Positives = 29/51 (56%)
Frame = +2
Query: 257 DSYVGDEAQSXRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH 409
D ++GDEA T K+PI H IV +WD ME+ W + LR PE+H
Sbjct: 283 DFFIGDEAIDKPSYAT-KWPIRHAIVEDWDLMERFWEQCIFKYLRAEPEDH 332
Score = 27.9 bits (59), Expect = 8.7
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +1
Query: 568 TGIVLDSGDGVFHTVXI 618
TG V+DSGDGV H + +
Sbjct: 356 TGCVIDSGDGVTHVIPV 372
>SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 41.9 bits (94), Expect = 5e-04
Identities = 21/39 (53%), Positives = 27/39 (69%)
Frame = -1
Query: 227 MAGPSHDRGEHGARSIISCETGLAHTGAIVYYQRGNFFV 111
MA + D GE+G+ SI+S ETGLAHTGAI+ Q + V
Sbjct: 1 MARSADDGGENGSGSIVSGETGLAHTGAIIDNQSCDIIV 39
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 40.3 bits (90), Expect = 0.002
Identities = 21/64 (32%), Positives = 33/64 (51%)
Frame = +1
Query: 490 MFXTFNSPPCTSPSKAVLSLYASGRTTGIVLDSGDGVFHTVXIYVGYALXPRHLRLEXXG 669
MF +N P +VL+ +A+GR+ G+V+DSG V ++ GY L +R G
Sbjct: 56 MFEKYNVPAFFLCKNSVLTAFANGRSNGLVIDSGATQTSAVPVHDGYVLQQAIVRSPLAG 115
Query: 670 RXLT 681
+T
Sbjct: 116 DFIT 119
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 35.9 bits (79), Expect = 0.033
Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 8/59 (13%)
Frame = +1
Query: 529 SKAVLSLYASG-------RT-TGIVLDSGDGVFHTVXIYVGYALXPRHLRLEXXGRXLT 681
+KAVL+L AS RT TG V+DSGDGV H + + GY + + GR +T
Sbjct: 41 TKAVLALAASWTSRQVGERTLTGCVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDIT 99
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 35.1 bits (77), Expect = 0.057
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +2
Query: 263 YVGDEAQSXRGILTLKY--PIEHGIVTNWDDMEKIWHHTFYNE 385
++GD+ + + L Y P + G + NWD ++IW +TF E
Sbjct: 273 FIGDQIEECKDYSALFYVLPFQKGFLVNWDVEKQIWDYTFGKE 315
Score = 27.9 bits (59), Expect = 8.7
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +3
Query: 117 EVAALVVDNGSGMCKAGFAGDDAPRAV 197
++A LV+D G+ K GFA + APR++
Sbjct: 232 KMATLVLDCGACSQKIGFASNQAPRSI 258
>SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 31.5 bits (68), Expect = 0.71
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -2
Query: 202 GNTARGASSPAKPALHIPEPLSTT 131
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_27518| Best HMM Match : RWD (HMM E-Value=0.015)
Length = 277
Score = 31.5 bits (68), Expect = 0.71
Identities = 11/19 (57%), Positives = 16/19 (84%), Gaps = 1/19 (5%)
Frame = +2
Query: 518 VRRHP-KPCSRCTRPVVPP 571
+RR+P +PCS CT+P +PP
Sbjct: 216 IRRYPTEPCSLCTKPALPP 234
>SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8)
Length = 170
Score = 31.5 bits (68), Expect = 0.71
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -2
Query: 202 GNTARGASSPAKPALHIPEPLSTT 131
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 749
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -2
Query: 202 GNTARGASSPAKPALHIPEPLSTT 131
GNT R PAKP+L++P P S T
Sbjct: 540 GNTNRRTRIPAKPSLNLPSPPSKT 563
>SB_58989| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 885
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = -1
Query: 275 HLLHKSPLSHTDHHALMAGPSHDRGEHGARSIISCETGL 159
H++ K+ +SH +HH ++ + +HG R + SCE+ L
Sbjct: 470 HIITKNIVSHLEHHDILY-----KFQHGFRKLRSCESQL 503
>SB_18097| Best HMM Match : NadA (HMM E-Value=2.2)
Length = 272
Score = 29.1 bits (62), Expect = 3.8
Identities = 18/48 (37%), Positives = 22/48 (45%)
Frame = -1
Query: 293 LXCSVPHLLHKSPLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 150
L C ++ LSH + H M D +HG RS SCET L T
Sbjct: 213 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVPT 259
>SB_47621| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 591
Score = 28.7 bits (61), Expect = 5.0
Identities = 18/48 (37%), Positives = 22/48 (45%)
Frame = -1
Query: 293 LXCSVPHLLHKSPLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 150
L C ++ LSH + H M D +HG RS SCET L T
Sbjct: 408 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 454
>SB_21074| Best HMM Match : NadA (HMM E-Value=2)
Length = 358
Score = 28.7 bits (61), Expect = 5.0
Identities = 18/48 (37%), Positives = 22/48 (45%)
Frame = -1
Query: 293 LXCSVPHLLHKSPLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 150
L C ++ LSH + H M D +HG RS SCET L T
Sbjct: 271 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 317
>SB_15522| Best HMM Match : DUF590 (HMM E-Value=5.8)
Length = 339
Score = 28.7 bits (61), Expect = 5.0
Identities = 18/48 (37%), Positives = 22/48 (45%)
Frame = -1
Query: 293 LXCSVPHLLHKSPLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 150
L C ++ LSH + H M D +HG RS SCET L T
Sbjct: 249 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 295
>SB_38460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 181
Score = 28.7 bits (61), Expect = 5.0
Identities = 18/48 (37%), Positives = 22/48 (45%)
Frame = -1
Query: 293 LXCSVPHLLHKSPLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 150
L C ++ LSH + H M D +HG RS SCET L T
Sbjct: 91 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 137
>SB_38372| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 402
Score = 28.7 bits (61), Expect = 5.0
Identities = 18/48 (37%), Positives = 22/48 (45%)
Frame = -1
Query: 293 LXCSVPHLLHKSPLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 150
L C ++ LSH + H M D +HG RS SCET L T
Sbjct: 91 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 137
>SB_4310| Best HMM Match : RVT_1 (HMM E-Value=5e-28)
Length = 570
Score = 28.7 bits (61), Expect = 5.0
Identities = 18/48 (37%), Positives = 22/48 (45%)
Frame = -1
Query: 293 LXCSVPHLLHKSPLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 150
L C ++ LSH + H M D +HG RS SCET L T
Sbjct: 173 LTCICCKVMEHIVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 219
>SB_2458| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 458
Score = 28.7 bits (61), Expect = 5.0
Identities = 18/48 (37%), Positives = 22/48 (45%)
Frame = -1
Query: 293 LXCSVPHLLHKSPLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 150
L C ++ LSH + H M D +HG RS SCET L T
Sbjct: 125 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 171
>SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -2
Query: 202 GNTARGASSPAKPALHIPEPLSTT 131
GNT R AKPAL++P P S T
Sbjct: 40 GNTNRRTRIQAKPALNLPSPPSKT 63
>SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 635
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -2
Query: 202 GNTARGASSPAKPALHIPEPLSTT 131
GNT R PAKP L IP P + T
Sbjct: 68 GNTNRRTRIPAKPTLTIPSPPTKT 91
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,436,577
Number of Sequences: 59808
Number of extensions: 502660
Number of successful extensions: 1342
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 1185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1341
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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