Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0319
         (716 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   5.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   6.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   6.7  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    21   8.8  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -1

Query: 284 SVPHLLHKSPLSHTDHHA 231
           + PH  H +PL+H+ + A
Sbjct: 438 ATPHHQHSTPLAHSSYPA 455


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 490  MFXTFNSPPCTSPSKAVLSLYASGRTTGI 576
            ++ T ++   +SPS  VLS+   G+  GI
Sbjct: 1473 LYLTSHNKIGSSPSSPVLSVRTQGQAPGI 1501


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 490  MFXTFNSPPCTSPSKAVLSLYASGRTTGI 576
            ++ T ++   +SPS  VLS+   G+  GI
Sbjct: 1469 LYLTSHNKIGSSPSSPVLSVRTQGQAPGI 1497


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 150 GMCKAGFAGD 179
           GMCK G +GD
Sbjct: 130 GMCKEGISGD 139


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,443
Number of Sequences: 438
Number of extensions: 4345
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)