Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0319
(716 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to S... 120 7e-28
At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496... 120 7e-28
At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494 A... 120 1e-27
At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497... 120 1e-27
At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493 A... 120 1e-27
At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671 A... 120 1e-27
At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96292 A... 118 5e-27
At3g18780.1 68416.m02385 actin 2 (ACT2) identical to SP|Q96292 A... 118 5e-27
At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96293 A... 118 5e-27
At2g42100.1 68415.m05205 actin, putative very strong similarity ... 110 1e-24
At2g42170.1 68415.m05219 actin, putative similar to actin 2 [Ara... 101 6e-22
At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Ac... 99 1e-21
At3g27000.1 68416.m03378 actin-related protein 2 (ARP2) nearly i... 64 9e-11
At1g73910.1 68414.m08559 actin-related protein 5 (ARP5) identica... 57 1e-08
At1g18450.1 68414.m02302 actin-related protein 4 (ARP4) neary id... 57 1e-08
At1g13180.1 68414.m01528 actin-related protein 3 (ARP3) identica... 55 4e-08
At3g12380.1 68416.m01543 actin/actin-like family protein similar... 43 2e-04
At3g60830.1 68416.m06805 actin-related protein 7 (ARP7) identica... 40 0.001
At5g01040.1 68418.m00007 laccase family protein / diphenol oxida... 35 0.062
At3g33520.1 68416.m04291 actin-related protein 6 (ARP6) nearly i... 33 0.25
At5g56180.2 68418.m07009 actin-related protein, putative (ARP8) ... 32 0.33
At5g56180.1 68418.m07008 actin-related protein, putative (ARP8) ... 32 0.33
At5g23150.1 68418.m02707 PWWP domain-containing protein identica... 29 4.1
At1g16690.2 68414.m01999 transcription factor-related similar to... 28 5.4
At1g16690.1 68414.m01998 transcription factor-related similar to... 28 5.4
At2g15780.1 68415.m01809 glycine-rich protein similar to Blue co... 28 7.1
At5g06610.1 68418.m00747 expressed protein contains Pfam profile... 27 9.4
At1g71850.1 68414.m08303 expressed protein ; expression supporte... 27 9.4
At1g19880.1 68414.m02493 regulator of chromosome condensation (R... 27 9.4
>At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to
SP|P53492 Actin 7 (Actin-2) {Arabidopsis thaliana}
Length = 377
Score = 120 bits (290), Expect = 7e-28
Identities = 52/58 (89%), Positives = 55/58 (94%)
Frame = +2
Query: 248 GTEDSYVGDEAQSXRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVPL 421
G +D+YVGDEAQS RGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPV L
Sbjct: 50 GQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLL 107
Score = 94.7 bits (225), Expect = 5e-20
Identities = 63/143 (44%), Positives = 75/143 (52%), Gaps = 2/143 (1%)
Frame = +3
Query: 114 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG--VMVGMGQRTLM*EMRHRA 287
E++ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH G V +G + E + +
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
Query: 288 XXXXXXXXXXXXXXXXLTGMTWRRFGIIPSTMSCVSPPRNTQSXWXPFSPTEAPLNPKXN 467
M + + V+P + P TEAPLNPK N
Sbjct: 65 GILTLKYPIEHGIVSNWDDMEKIWHHTFYNELR-VAPEEH------PVLLTEAPLNPKAN 117
Query: 468 REKMTQIHVLXIQQPAMYVAIQS 536
REKMTQI PAMYVAIQ+
Sbjct: 118 REKMTQIMFETFNVPAMYVAIQA 140
Score = 86.6 bits (205), Expect = 1e-17
Identities = 45/65 (69%), Positives = 47/65 (72%)
Frame = +1
Query: 490 MFXTFNSPPCTSPSKAVLSLYASGRTTGIVLDSGDGVFHTVXIYVGYALXPRHLRLEXXG 669
MF TFN P +AVLSLYASGRTTGIVLDSGDGV HTV IY GYAL LRL+ G
Sbjct: 125 MFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 184
Query: 670 RXLTD 684
R LTD
Sbjct: 185 RDLTD 189
>At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496
Actin 11 {Arabidopsis thaliana}
Length = 377
Score = 120 bits (290), Expect = 7e-28
Identities = 52/58 (89%), Positives = 55/58 (94%)
Frame = +2
Query: 248 GTEDSYVGDEAQSXRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVPL 421
G +D+YVGDEAQS RGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPV L
Sbjct: 50 GQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLL 107
Score = 95.1 bits (226), Expect = 4e-20
Identities = 63/143 (44%), Positives = 75/143 (52%), Gaps = 2/143 (1%)
Frame = +3
Query: 114 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG--VMVGMGQRTLM*EMRHRA 287
E++ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH G V +G + E + +
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
Query: 288 XXXXXXXXXXXXXXXXLTGMTWRRFGIIPSTMSCVSPPRNTQSXWXPFSPTEAPLNPKXN 467
M + + V+P + P TEAPLNPK N
Sbjct: 65 GILTLKYPIEHGIVSNWDDMEKIWHHTFYNELR-VAPEEH------PVLLTEAPLNPKAN 117
Query: 468 REKMTQIHVLXIQQPAMYVAIQS 536
REKMTQI PAMYVAIQ+
Sbjct: 118 REKMTQIMFETFNTPAMYVAIQA 140
Score = 87.8 bits (208), Expect = 6e-18
Identities = 45/65 (69%), Positives = 48/65 (73%)
Frame = +1
Query: 490 MFXTFNSPPCTSPSKAVLSLYASGRTTGIVLDSGDGVFHTVXIYVGYALXPRHLRLEXXG 669
MF TFN+P +AVLSLYASGRTTGIVLDSGDGV HTV IY GYAL LRL+ G
Sbjct: 125 MFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 184
Query: 670 RXLTD 684
R LTD
Sbjct: 185 RDLTD 189
>At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494
Actin 4 {Arabidopsis thaliana}
Length = 377
Score = 120 bits (289), Expect = 1e-27
Identities = 52/58 (89%), Positives = 54/58 (93%)
Frame = +2
Query: 248 GTEDSYVGDEAQSXRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVPL 421
G +D+YVGDEAQS RGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHPV L
Sbjct: 50 GQKDAYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLL 107
Score = 95.1 bits (226), Expect = 4e-20
Identities = 63/143 (44%), Positives = 75/143 (52%), Gaps = 2/143 (1%)
Frame = +3
Query: 114 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG--VMVGMGQRTLM*EMRHRA 287
E++ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH G V +G + E + +
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
Query: 288 XXXXXXXXXXXXXXXXLTGMTWRRFGIIPSTMSCVSPPRNTQSXWXPFSPTEAPLNPKXN 467
M + + V+P + P TEAPLNPK N
Sbjct: 65 GILTLKYPIEHGIVNNWDDMEKIWHHTFYNELR-VAPEEH------PVLLTEAPLNPKAN 117
Query: 468 REKMTQIHVLXIQQPAMYVAIQS 536
REKMTQI PAMYVAIQ+
Sbjct: 118 REKMTQIMFETFNTPAMYVAIQA 140
Score = 87.8 bits (208), Expect = 6e-18
Identities = 45/65 (69%), Positives = 48/65 (73%)
Frame = +1
Query: 490 MFXTFNSPPCTSPSKAVLSLYASGRTTGIVLDSGDGVFHTVXIYVGYALXPRHLRLEXXG 669
MF TFN+P +AVLSLYASGRTTGIVLDSGDGV HTV IY GYAL LRL+ G
Sbjct: 125 MFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 184
Query: 670 RXLTD 684
R LTD
Sbjct: 185 RDLTD 189
>At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497
Actin 12 {Arabidopsis thaliana}
Length = 377
Score = 120 bits (289), Expect = 1e-27
Identities = 52/58 (89%), Positives = 54/58 (93%)
Frame = +2
Query: 248 GTEDSYVGDEAQSXRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVPL 421
G +D+YVGDEAQS RGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHPV L
Sbjct: 50 GQKDAYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLL 107
Score = 95.1 bits (226), Expect = 4e-20
Identities = 63/143 (44%), Positives = 75/143 (52%), Gaps = 2/143 (1%)
Frame = +3
Query: 114 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG--VMVGMGQRTLM*EMRHRA 287
E++ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH G V +G + E + +
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
Query: 288 XXXXXXXXXXXXXXXXLTGMTWRRFGIIPSTMSCVSPPRNTQSXWXPFSPTEAPLNPKXN 467
M + + V+P + P TEAPLNPK N
Sbjct: 65 GILTLKYPIEHGIVNNWDDMEKIWHHTFYNELR-VAPEEH------PVLLTEAPLNPKAN 117
Query: 468 REKMTQIHVLXIQQPAMYVAIQS 536
REKMTQI PAMYVAIQ+
Sbjct: 118 REKMTQIMFETFNTPAMYVAIQA 140
Score = 87.8 bits (208), Expect = 6e-18
Identities = 45/65 (69%), Positives = 48/65 (73%)
Frame = +1
Query: 490 MFXTFNSPPCTSPSKAVLSLYASGRTTGIVLDSGDGVFHTVXIYVGYALXPRHLRLEXXG 669
MF TFN+P +AVLSLYASGRTTGIVLDSGDGV HTV IY GYAL LRL+ G
Sbjct: 125 MFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 184
Query: 670 RXLTD 684
R LTD
Sbjct: 185 RDLTD 189
>At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493
Actin 3 {Arabidopsis thaliana}; supported by full-length
cDNA: Ceres: 19581.
Length = 377
Score = 120 bits (288), Expect = 1e-27
Identities = 51/58 (87%), Positives = 54/58 (93%)
Frame = +2
Query: 248 GTEDSYVGDEAQSXRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVPL 421
G +D+YVGDEAQS RGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP+ L
Sbjct: 50 GQKDAYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPILL 107
Score = 95.5 bits (227), Expect = 3e-20
Identities = 63/143 (44%), Positives = 75/143 (52%), Gaps = 2/143 (1%)
Frame = +3
Query: 114 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG--VMVGMGQRTLM*EMRHRA 287
E++ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH G V +G + E + +
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
Query: 288 XXXXXXXXXXXXXXXXLTGMTWRRFGIIPSTMSCVSPPRNTQSXWXPFSPTEAPLNPKXN 467
M + + V+P + P TEAPLNPK N
Sbjct: 65 GILTLKYPIEHGIVNNWDDMEKIWHHTFYNELR-VAPEEH------PILLTEAPLNPKAN 117
Query: 468 REKMTQIHVLXIQQPAMYVAIQS 536
REKMTQI PAMYVAIQ+
Sbjct: 118 REKMTQIMFETFNAPAMYVAIQA 140
Score = 87.8 bits (208), Expect = 6e-18
Identities = 45/65 (69%), Positives = 48/65 (73%)
Frame = +1
Query: 490 MFXTFNSPPCTSPSKAVLSLYASGRTTGIVLDSGDGVFHTVXIYVGYALXPRHLRLEXXG 669
MF TFN+P +AVLSLYASGRTTGIVLDSGDGV HTV IY GYAL LRL+ G
Sbjct: 125 MFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 184
Query: 670 RXLTD 684
R LTD
Sbjct: 185 RDLTD 189
>At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671
Actin 1 (Actin 3) {Arabidopsis thaliana}
Length = 377
Score = 120 bits (288), Expect = 1e-27
Identities = 51/58 (87%), Positives = 54/58 (93%)
Frame = +2
Query: 248 GTEDSYVGDEAQSXRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVPL 421
G +D+YVGDEAQS RGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP+ L
Sbjct: 50 GQKDAYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPILL 107
Score = 95.5 bits (227), Expect = 3e-20
Identities = 63/143 (44%), Positives = 75/143 (52%), Gaps = 2/143 (1%)
Frame = +3
Query: 114 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG--VMVGMGQRTLM*EMRHRA 287
E++ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH G V +G + E + +
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
Query: 288 XXXXXXXXXXXXXXXXLTGMTWRRFGIIPSTMSCVSPPRNTQSXWXPFSPTEAPLNPKXN 467
M + + V+P + P TEAPLNPK N
Sbjct: 65 GILTLKYPIEHGIVNNWDDMEKIWHHTFYNELR-VAPEEH------PILLTEAPLNPKAN 117
Query: 468 REKMTQIHVLXIQQPAMYVAIQS 536
REKMTQI PAMYVAIQ+
Sbjct: 118 REKMTQIMFETFNAPAMYVAIQA 140
Score = 87.8 bits (208), Expect = 6e-18
Identities = 45/65 (69%), Positives = 48/65 (73%)
Frame = +1
Query: 490 MFXTFNSPPCTSPSKAVLSLYASGRTTGIVLDSGDGVFHTVXIYVGYALXPRHLRLEXXG 669
MF TFN+P +AVLSLYASGRTTGIVLDSGDGV HTV IY GYAL LRL+ G
Sbjct: 125 MFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 184
Query: 670 RXLTD 684
R LTD
Sbjct: 185 RDLTD 189
>At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96292
Actin 2 {Arabidopsis thaliana}; nearly identical to
SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and
to At1g49240
Length = 377
Score = 118 bits (283), Expect = 5e-27
Identities = 49/56 (87%), Positives = 54/56 (96%)
Frame = +2
Query: 254 EDSYVGDEAQSXRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVPL 421
+D+YVGDEAQS RGILTLKYPIEHG+V+NWDDMEKIWHHTFYNELR+APEEHPV L
Sbjct: 52 KDAYVGDEAQSKRGILTLKYPIEHGVVSNWDDMEKIWHHTFYNELRIAPEEHPVLL 107
Score = 86.2 bits (204), Expect = 2e-17
Identities = 44/65 (67%), Positives = 48/65 (73%)
Frame = +1
Query: 490 MFXTFNSPPCTSPSKAVLSLYASGRTTGIVLDSGDGVFHTVXIYVGYALXPRHLRLEXXG 669
MF TFNSP +AVLSLYASGRTTGIVLDSGDGV HTV IY G++L LRL+ G
Sbjct: 125 MFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGFSLPHAILRLDLAG 184
Query: 670 RXLTD 684
R LTD
Sbjct: 185 RDLTD 189
Score = 83.8 bits (198), Expect = 1e-16
Identities = 35/48 (72%), Positives = 42/48 (87%)
Frame = +3
Query: 114 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQR 257
+++ +V DNG+GM KAGFAGDDAPRAVFPS+VGRPRH GVMVGM Q+
Sbjct: 5 DDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPRHHGVMVGMNQK 52
Score = 51.2 bits (117), Expect = 7e-07
Identities = 25/37 (67%), Positives = 26/37 (70%)
Frame = +3
Query: 426 PFSPTEAPLNPKXNREKMTQIHVLXIQQPAMYVAIQS 536
P TEAPLNPK NREKMTQI PAMYVAIQ+
Sbjct: 104 PVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQA 140
>At3g18780.1 68416.m02385 actin 2 (ACT2) identical to SP|Q96292
Actin 2 {Arabidopsis thaliana}; nearly identical to
SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and
to At1g49240
Length = 371
Score = 118 bits (283), Expect = 5e-27
Identities = 49/56 (87%), Positives = 54/56 (96%)
Frame = +2
Query: 254 EDSYVGDEAQSXRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVPL 421
+D+YVGDEAQS RGILTLKYPIEHG+V+NWDDMEKIWHHTFYNELR+APEEHPV L
Sbjct: 52 KDAYVGDEAQSKRGILTLKYPIEHGVVSNWDDMEKIWHHTFYNELRIAPEEHPVLL 107
Score = 86.2 bits (204), Expect = 2e-17
Identities = 44/65 (67%), Positives = 48/65 (73%)
Frame = +1
Query: 490 MFXTFNSPPCTSPSKAVLSLYASGRTTGIVLDSGDGVFHTVXIYVGYALXPRHLRLEXXG 669
MF TFNSP +AVLSLYASGRTTGIVLDSGDGV HTV IY G++L LRL+ G
Sbjct: 125 MFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGFSLPHAILRLDLAG 184
Query: 670 RXLTD 684
R LTD
Sbjct: 185 RDLTD 189
Score = 83.8 bits (198), Expect = 1e-16
Identities = 35/48 (72%), Positives = 42/48 (87%)
Frame = +3
Query: 114 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQR 257
+++ +V DNG+GM KAGFAGDDAPRAVFPS+VGRPRH GVMVGM Q+
Sbjct: 5 DDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPRHHGVMVGMNQK 52
Score = 51.2 bits (117), Expect = 7e-07
Identities = 25/37 (67%), Positives = 26/37 (70%)
Frame = +3
Query: 426 PFSPTEAPLNPKXNREKMTQIHVLXIQQPAMYVAIQS 536
P TEAPLNPK NREKMTQI PAMYVAIQ+
Sbjct: 104 PVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQA 140
>At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96293
Actin 8 {Arabidopsis thaliana}; nearly identical to
SP|Q96292 Actin 2 [Arabidopsis thaliana] GI:1669387, and
to At3g18780
Length = 377
Score = 118 bits (283), Expect = 5e-27
Identities = 49/56 (87%), Positives = 54/56 (96%)
Frame = +2
Query: 254 EDSYVGDEAQSXRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVPL 421
+D+YVGDEAQS RGILTLKYPIEHG+V+NWDDMEKIWHHTFYNELR+APEEHPV L
Sbjct: 52 KDAYVGDEAQSKRGILTLKYPIEHGVVSNWDDMEKIWHHTFYNELRIAPEEHPVLL 107
Score = 86.2 bits (204), Expect = 2e-17
Identities = 44/65 (67%), Positives = 48/65 (73%)
Frame = +1
Query: 490 MFXTFNSPPCTSPSKAVLSLYASGRTTGIVLDSGDGVFHTVXIYVGYALXPRHLRLEXXG 669
MF TFNSP +AVLSLYASGRTTGIVLDSGDGV HTV IY G++L LRL+ G
Sbjct: 125 MFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGFSLPHAILRLDLAG 184
Query: 670 RXLTD 684
R LTD
Sbjct: 185 RDLTD 189
Score = 83.8 bits (198), Expect = 1e-16
Identities = 35/48 (72%), Positives = 42/48 (87%)
Frame = +3
Query: 114 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQR 257
+++ +V DNG+GM KAGFAGDDAPRAVFPS+VGRPRH GVMVGM Q+
Sbjct: 5 DDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPRHHGVMVGMNQK 52
Score = 51.2 bits (117), Expect = 7e-07
Identities = 25/37 (67%), Positives = 26/37 (70%)
Frame = +3
Query: 426 PFSPTEAPLNPKXNREKMTQIHVLXIQQPAMYVAIQS 536
P TEAPLNPK NREKMTQI PAMYVAIQ+
Sbjct: 104 PVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQA 140
>At2g42100.1 68415.m05205 actin, putative very strong similarity to
SP|P53496 Actin 11 {Arabidopsis thaliana}, SP|P53493
Actin 3 {Arabidopsis thaliana}; contains Pfam profile
PF00022: Actin
Length = 378
Score = 110 bits (264), Expect = 1e-24
Identities = 44/56 (78%), Positives = 53/56 (94%)
Frame = +2
Query: 254 EDSYVGDEAQSXRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVPL 421
+D++VGDEAQ+ RGIL+LKYPIEHG+V+NWDDMEKIWHHTFYNELR+ PEEHP+ L
Sbjct: 53 KDTFVGDEAQARRGILSLKYPIEHGVVSNWDDMEKIWHHTFYNELRLEPEEHPILL 108
Score = 84.2 bits (199), Expect = 8e-17
Identities = 36/48 (75%), Positives = 43/48 (89%)
Frame = +3
Query: 114 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQR 257
+E A+V DNG+GM KAGFAGDDAPRAVFPS+VGRPRH+GVMVGM ++
Sbjct: 6 DESVAIVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPRHRGVMVGMDEK 53
Score = 78.6 bits (185), Expect = 4e-15
Identities = 41/65 (63%), Positives = 46/65 (70%)
Frame = +1
Query: 490 MFXTFNSPPCTSPSKAVLSLYASGRTTGIVLDSGDGVFHTVXIYVGYALXPRHLRLEXXG 669
MF +F P +AVLSLY+SGRTTGIVLDSGDGV HTV IY GYAL LRL+ G
Sbjct: 126 MFESFAFPSMYIGIQAVLSLYSSGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 185
Query: 670 RXLTD 684
R LT+
Sbjct: 186 RDLTE 190
Score = 46.8 bits (106), Expect = 1e-05
Identities = 22/37 (59%), Positives = 25/37 (67%)
Frame = +3
Query: 426 PFSPTEAPLNPKXNREKMTQIHVLXIQQPAMYVAIQS 536
P TEAPLNPK NREKMTQI P+MY+ IQ+
Sbjct: 105 PILLTEAPLNPKVNREKMTQIMFESFAFPSMYIGIQA 141
>At2g42170.1 68415.m05219 actin, putative similar to actin 2
[Arabidopsis thaliana] gi|9293903|dbj|BAB01806
Length = 329
Score = 101 bits (241), Expect = 6e-22
Identities = 41/55 (74%), Positives = 50/55 (90%)
Frame = +2
Query: 257 DSYVGDEAQSXRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVPL 421
D +VGD+A++ GILTL YP+EHG+V+NWDDMEKIW+HTFY+ELRVAPEEHPV L
Sbjct: 8 DLFVGDDAEARSGILTLDYPMEHGVVSNWDDMEKIWYHTFYSELRVAPEEHPVLL 62
Score = 67.3 bits (157), Expect = 9e-12
Identities = 37/65 (56%), Positives = 42/65 (64%)
Frame = +1
Query: 490 MFXTFNSPPCTSPSKAVLSLYASGRTTGIVLDSGDGVFHTVXIYVGYALXPRHLRLEXXG 669
MF TF P +A LSL+ASGRTTG VLDSGDGV + V IY G AL LRL+ G
Sbjct: 80 MFETFAVPSMYIGMQAALSLHASGRTTGTVLDSGDGVSYIVPIYEGSALPHAILRLDLAG 139
Query: 670 RXLTD 684
R LT+
Sbjct: 140 RHLTN 144
Score = 43.6 bits (98), Expect = 1e-04
Identities = 20/37 (54%), Positives = 25/37 (67%)
Frame = +3
Query: 426 PFSPTEAPLNPKXNREKMTQIHVLXIQQPAMYVAIQS 536
P TEAPLNPK +REKMTQI P+MY+ +Q+
Sbjct: 59 PVLLTEAPLNPKADREKMTQIMFETFAVPSMYIGMQA 95
>At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Actin
11 {Arabidopsis thaliana}; contains Pfam profile
PF00022: Actin
Length = 366
Score = 99 bits (238), Expect = 1e-21
Identities = 45/63 (71%), Positives = 50/63 (79%)
Frame = +2
Query: 233 RDGRYGTEDSYVGDEAQSXRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 412
RDG +SYVG+E + R ILTLK P+EHGIV NWDDMEKIWH+TFYNELRV PEEHP
Sbjct: 35 RDG-LNPNESYVGEEGHANRDILTLKDPMEHGIVNNWDDMEKIWHYTFYNELRVDPEEHP 93
Query: 413 VPL 421
V L
Sbjct: 94 VLL 96
Score = 70.1 bits (164), Expect = 1e-12
Identities = 35/65 (53%), Positives = 44/65 (67%)
Frame = +1
Query: 490 MFXTFNSPPCTSPSKAVLSLYASGRTTGIVLDSGDGVFHTVXIYVGYALXPRHLRLEXXG 669
MF +F+ P ++VL LY+SGRTTG+VLD G+ V HTV +Y GYAL LRL+ G
Sbjct: 114 MFESFDVPAMYVSMQSVLYLYSSGRTTGVVLDLGERVSHTVPVYEGYALPHGILRLDLGG 173
Query: 670 RXLTD 684
R LTD
Sbjct: 174 RDLTD 178
Score = 52.4 bits (120), Expect = 3e-07
Identities = 21/32 (65%), Positives = 26/32 (81%)
Frame = +3
Query: 129 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 224
+V D G GM +AGFAGD+AP+ VFP +VGRPR
Sbjct: 4 IVCDKGHGMVQAGFAGDEAPKVVFPCVVGRPR 35
Score = 47.2 bits (107), Expect = 1e-05
Identities = 23/37 (62%), Positives = 25/37 (67%)
Frame = +3
Query: 426 PFSPTEAPLNPKXNREKMTQIHVLXIQQPAMYVAIQS 536
P TEAP NPK NREKMTQI PAMYV++QS
Sbjct: 93 PVLLTEAPYNPKANREKMTQIMFESFDVPAMYVSMQS 129
>At3g27000.1 68416.m03378 actin-related protein 2 (ARP2) nearly
identical to actin-related protein 2 (ARP2) [Arabidopsis
thaliana] GI:3818624; contains Pfam profile PF00022:
Actin
Length = 389
Score = 64.1 bits (149), Expect = 9e-11
Identities = 24/51 (47%), Positives = 33/51 (64%)
Frame = +2
Query: 254 EDSYVGDEAQSXRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEE 406
+D VG+ R L + YP+ +GIV NWDDME +W H FYNEL++ P +
Sbjct: 51 KDIVVGETCSELRHQLDINYPVHNGIVQNWDDMEHVWDHAFYNELKINPSD 101
Score = 53.6 bits (123), Expect = 1e-07
Identities = 27/64 (42%), Positives = 36/64 (56%)
Frame = +1
Query: 490 MFXTFNSPPCTSPSKAVLSLYASGRTTGIVLDSGDGVFHTVXIYVGYALXPRHLRLEXXG 669
MF +N +AVL+LYA G TG+V+DSGDGV H V + GY+ R+ G
Sbjct: 124 MFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAG 183
Query: 670 RXLT 681
R +T
Sbjct: 184 RHIT 187
Score = 45.6 bits (103), Expect = 3e-05
Identities = 18/31 (58%), Positives = 24/31 (77%)
Frame = +3
Query: 129 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 221
+V DNG+G K GFAG++ P +VFP +VGRP
Sbjct: 7 VVCDNGTGYVKCGFAGENFPTSVFPCVVGRP 37
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 438 TEAPLNPKXNREKMTQIHVLXIQQPAMYVAIQS 536
T+ PLNP NREKM + +++ IQ+
Sbjct: 107 TDPPLNPSKNREKMIETMFEKYNFAGVFIQIQA 139
>At1g73910.1 68414.m08559 actin-related protein 5 (ARP5) identical
to actin-related protein 5 (ARP5) GI:21489922 from
[Arabidopsis thaliana]
Length = 145
Score = 57.2 bits (132), Expect = 1e-08
Identities = 24/34 (70%), Positives = 31/34 (91%)
Frame = +3
Query: 114 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 215
+EV+A+VVD GS CKAG+AG+DAP+AVFPS+VG
Sbjct: 5 DEVSAIVVDLGSHTCKAGYAGEDAPKAVFPSVVG 38
Score = 49.2 bits (112), Expect = 3e-06
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +2
Query: 236 DGRYGTEDSYVGDEAQSXR-GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 412
D G Y G +A + R + + P + GIVT+WD ++ +W H F N L + P EHP
Sbjct: 61 DKEKGKRKLYTGSQALNFRRDQMEILSPTKDGIVTDWDMVDNVWDHAFRNCLMIDPTEHP 120
Query: 413 VPL 421
+ L
Sbjct: 121 MLL 123
>At1g18450.1 68414.m02302 actin-related protein 4 (ARP4) neary
identical to actin-related protein 4 (ARP4) [Arabidopsis
thaliana] GI:21427463; contains Pfam profile PF00022:
Actin; supporting cDNA gi|21427462|gb|AF507912.1|
Length = 441
Score = 56.8 bits (131), Expect = 1e-08
Identities = 23/34 (67%), Positives = 31/34 (91%)
Frame = +3
Query: 114 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 215
+EV+A+VVD GS CKAG+AG+DAP+AVFPS++G
Sbjct: 5 DEVSAIVVDLGSHTCKAGYAGEDAPKAVFPSVIG 38
Score = 49.6 bits (113), Expect = 2e-06
Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Frame = +2
Query: 263 YVGDEAQSXR-GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVPL 421
YVG +A S R + + PI+ GIV++WD ++ IW H F + L + P EHP+ L
Sbjct: 76 YVGSQAMSYRRDHMEVLSPIKDGIVSDWDLVDNIWEHAFKSCLMIDPTEHPMLL 129
Score = 37.1 bits (82), Expect = 0.012
Identities = 20/65 (30%), Positives = 29/65 (44%)
Frame = +1
Query: 490 MFXTFNSPPCTSPSKAVLSLYASGRTTGIVLDSGDGVFHTVXIYVGYALXPRHLRLEXXG 669
MF + P VL+ +A+GR T +V+D G G ++ GY L + G
Sbjct: 147 MFEKYKVPALFMAKNPVLTSFATGRATSLVVDCGGGSTTISPVHDGYVLQKAVVSSPLGG 206
Query: 670 RXLTD 684
LTD
Sbjct: 207 EFLTD 211
>At1g13180.1 68414.m01528 actin-related protein 3 (ARP3) identical
to actin-related protein 3 (ARP3) [Arabidopsis thaliana]
GI:21427461; contains Pfam profile PF00022: Actin
Length = 427
Score = 55.2 bits (127), Expect = 4e-08
Identities = 27/54 (50%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Frame = +2
Query: 257 DSYVGDEAQSX-RGILT--LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH 409
D Y+GDEA + R T L YPIEHG V +WD ME+ W +N LR PE+H
Sbjct: 67 DFYIGDEALAKSRSSSTHNLHYPIEHGQVEDWDAMERYWQQCIFNYLRCDPEDH 120
Score = 37.1 bits (82), Expect = 0.012
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Frame = +1
Query: 490 MFXTFNSPPCTSPSKAVLSLYASGRT-----TGIVLDSGDGVFHTVXIYVGYALXPRHLR 654
+F TFN P +VL+L A T TG+V+D GDG H V + GY +
Sbjct: 142 LFETFNVPGLYIAVNSVLALAAGYTTSKCEMTGVVVDVGDGATHVVPVAEGYVIGSCIKS 201
Query: 655 LEXXGRXLT 681
+ G+ +T
Sbjct: 202 IPIAGKDVT 210
Score = 35.9 bits (79), Expect = 0.027
Identities = 14/29 (48%), Positives = 21/29 (72%)
Frame = +3
Query: 126 ALVVDNGSGMCKAGFAGDDAPRAVFPSIV 212
A+V+DNG+G K GFAG+ P + P++V
Sbjct: 8 AIVIDNGTGYTKMGFAGNVEPCFILPTVV 36
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 429 FSPTEAPLNPKXNREKMTQIHVLXIQQPAMYVAIQS 536
F TE+PL P +RE +I P +Y+A+ S
Sbjct: 122 FLLTESPLTPPESREYTGEILFETFNVPGLYIAVNS 157
>At3g12380.1 68416.m01543 actin/actin-like family protein similar to
SP|P53946 Actin-like protein ARP5 {Saccharomyces
cerevisiae}; contains Pfam profile PF00022: Actin
Length = 724
Score = 42.7 bits (96), Expect = 2e-04
Identities = 17/34 (50%), Positives = 25/34 (73%)
Frame = +3
Query: 129 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 230
+V+DNG+ + G+AG+ PR VF +IV RPRH+
Sbjct: 22 IVIDNGASYFRIGWAGETEPRVVFRNIVQRPRHK 55
>At3g60830.1 68416.m06805 actin-related protein 7 (ARP7) identical
to actin-related protein 7 (ARP7) [Arabidopsis thaliana]
GI:21427469; contains Pfam profile PF00022: Actin
Length = 363
Score = 40.3 bits (90), Expect = 0.001
Identities = 24/64 (37%), Positives = 29/64 (45%)
Frame = +1
Query: 490 MFXTFNSPPCTSPSKAVLSLYASGRTTGIVLDSGDGVFHTVXIYVGYALXPRHLRLEXXG 669
MF TFN + +AVLSLYA GR +G +D G G + G R E G
Sbjct: 111 MFETFNVSGFYASEQAVLSLYAVGRISGCTVDIGHGKIDIAPVLEGAVQHIASKRFELGG 170
Query: 670 RXLT 681
LT
Sbjct: 171 TELT 174
Score = 28.7 bits (61), Expect = 4.1
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 314 PIEHGIVTNWDDMEKIWHHTFYNEL 388
PIE G++ +WD ME + + Y L
Sbjct: 57 PIERGLIRDWDAMEDLLRYVVYTGL 81
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +3
Query: 126 ALVVDNGSGMCKAGFA-GDDAPRAVFPSIVGR 218
ALVVD GS KAG A D +P + PS + R
Sbjct: 3 ALVVDAGSKFLKAGAAIPDQSPAMIIPSQMKR 34
>At5g01040.1 68418.m00007 laccase family protein / diphenol oxidase
family protein similar to laccase [Pinus
taeda][GI:13661201], lac110 laccase, Populus
trichocarpa, EMBL:PTY13773
Length = 584
Score = 34.7 bits (76), Expect = 0.062
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = -2
Query: 283 LCLISYIRVL-CPIPTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSS 113
+ + YI + P P I P RGL +G T+ +SSPA+P + +P +ST + TS+
Sbjct: 278 MATLPYISAIGIPTPDIKP-TRGLIVYQGATS--SSSPAEPLMPVPNDMSTAHRFTSN 332
>At3g33520.1 68416.m04291 actin-related protein 6 (ARP6) nearly
identical to actin-related protein 6 (ARP6) [Arabidopsis
thaliana] GI:21427467; contains Pfam profile PF00022:
Actin
Length = 421
Score = 32.7 bits (71), Expect = 0.25
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +3
Query: 129 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 221
+V+DNG G+ KAG G+ P V P+ + +P
Sbjct: 5 VVLDNGGGLIKAGQGGERDPTTVIPNCLYKP 35
Score = 30.7 bits (66), Expect = 1.0
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 305 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP 400
++ PI+ G + N D +IW H F + L +AP
Sbjct: 61 VRRPIDRGYLINSDLQREIWSHLFTSLLHIAP 92
>At5g56180.2 68418.m07009 actin-related protein, putative (ARP8)
strong similarity to actin-related protein 8A (ARP8)
[Arabidopsis thaliana] GI:21427473; contains Pfam
profile PF00022: Actin; supporting cDNA
gi|21427470|gb|AF507916.1|
Length = 387
Score = 32.3 bits (70), Expect = 0.33
Identities = 20/55 (36%), Positives = 32/55 (58%)
Frame = +1
Query: 505 NSPPCTSPSKAVLSLYASGRTTGIVLDSGDGVFHTVXIYVGYALXPRHLRLEXXG 669
N P + ++AVL+LYA+ RT+GIV++ G V + I G + R + +E G
Sbjct: 230 NVPAVCAVNQAVLALYAARRTSGIVVNIGFQVITILPILHGKVM--RQVGVEVIG 282
>At5g56180.1 68418.m07008 actin-related protein, putative (ARP8)
strong similarity to actin-related protein 8A (ARP8)
[Arabidopsis thaliana] GI:21427473; contains Pfam
profile PF00022: Actin; supporting cDNA
gi|21427470|gb|AF507916.1|
Length = 471
Score = 32.3 bits (70), Expect = 0.33
Identities = 20/55 (36%), Positives = 32/55 (58%)
Frame = +1
Query: 505 NSPPCTSPSKAVLSLYASGRTTGIVLDSGDGVFHTVXIYVGYALXPRHLRLEXXG 669
N P + ++AVL+LYA+ RT+GIV++ G V + I G + R + +E G
Sbjct: 230 NVPAVCAVNQAVLALYAARRTSGIVVNIGFQVITILPILHGKVM--RQVGVEVIG 282
>At5g23150.1 68418.m02707 PWWP domain-containing protein identical to
cDNA putative transcription factor (HUA2) GI:4868119;
contains Pfam profile PF00855: PWWP domain
Length = 1392
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +2
Query: 482 PDSCSXHSTARHVRRHPKPCSRCTRPVVPPVSCWTPA 592
P + S + H P +RP +P V+CW PA
Sbjct: 1356 PSAASNLQAVPAIPGHTAPQMLPSRPDIPTVNCWRPA 1392
>At1g16690.2 68414.m01999 transcription factor-related similar to
enhancer of polycomb (GI:11907923)[Homo sapiens]
Length = 439
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/43 (27%), Positives = 19/43 (44%)
Frame = +2
Query: 272 DEAQSXRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP 400
D A L++KY + H I + W + +IW L+ P
Sbjct: 169 DAAGEALKYLSIKYGVFHAIYSYWKNKREIWQKPILRRLQPPP 211
>At1g16690.1 68414.m01998 transcription factor-related similar to
enhancer of polycomb (GI:11907923)[Homo sapiens]
Length = 439
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/43 (27%), Positives = 19/43 (44%)
Frame = +2
Query: 272 DEAQSXRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP 400
D A L++KY + H I + W + +IW L+ P
Sbjct: 169 DAAGEALKYLSIKYGVFHAIYSYWKNKREIWQKPILRRLQPPP 211
>At2g15780.1 68415.m01809 glycine-rich protein similar to Blue
copper protein precursor (SP:Q41001) {Pisum sativum};
contains a Pfam PF02298: Plastocyanin-like domain
related to blue copper-binding protein; contains a
domain related to blue copper-binding protein
Length = 257
Score = 27.9 bits (59), Expect = 7.1
Identities = 19/65 (29%), Positives = 22/65 (33%)
Frame = -3
Query: 591 AGVQHDTGGTTGRVQREHGFGWRRTWRAVECXEHESGSSSLCXPWG*GEPQLGKKGPXGT 412
+G G G +G GW W V H SGS WG G G G+
Sbjct: 64 SGSASTPGSGWGFGSSRNGSGWGWGWGGVPNNTHSSGSGG--SGWGMGPNNNYSSGSGGS 121
Query: 411 GCSSG 397
G G
Sbjct: 122 GSGWG 126
>At5g06610.1 68418.m00747 expressed protein contains Pfam profile
PF04788: Protein of unknown function (DUF620)
Length = 368
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = -2
Query: 226 WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSSHI 104
WR P + + A+GA P + AL +PL+ ++ +S+ +
Sbjct: 167 WRYTPWLGDHAAKGAIRPLRRALQGLDPLTISSVFSSAQFV 207
>At1g71850.1 68414.m08303 expressed protein ; expression supported
by MPSS
Length = 470
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +2
Query: 203 LDRGKAPPSGRDGRYGTEDSYVGDEAQSXRGILTLK 310
L+RG+ S R GR +S D+AQS R ++LK
Sbjct: 426 LERGRRNSSPRSGRRSFGNSGSRDKAQSRRSKISLK 461
>At1g19880.1 68414.m02493 regulator of chromosome condensation
(RCC1) family protein low similarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 538
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/46 (32%), Positives = 17/46 (36%)
Frame = -3
Query: 531 GWRRTWRAVECXEHESGSSSLCXPWG*GEPQLGKKGPXGTGCSSGA 394
GW W H G+ S C W G Q G+ G G S A
Sbjct: 336 GWNLRWMDSGSMHHFVGADSSCISW--GHAQYGELGYGPNGQKSSA 379
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,296,127
Number of Sequences: 28952
Number of extensions: 334439
Number of successful extensions: 924
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 924
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -