Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0317
         (761 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces pom...    27   2.2  
SPAC21E11.06 |tif224||translation initiation factor eIF2B delta ...    25   8.9  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    25   8.9  

>SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 437

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -1

Query: 107 LLSLRKYYRNLLRYSIKRKYVHKYKSDETKISC 9
           L S+RK  RN+L   +K K+  K+ +D+  + C
Sbjct: 356 LKSMRKALRNILEKDLKNKHSWKHITDQIGMFC 388


>SPAC21E11.06 |tif224||translation initiation factor eIF2B delta
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -2

Query: 133 LSIVSQQGLYCHYVNIIGTSYVIQ 62
           L ++++ G+ C YV I   SY++Q
Sbjct: 311 LKLLTEHGIECTYVMISALSYIMQ 334


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 413 INFXPQRGI*LNSKTRRFYELCNFDFIY 496
           IN    RGI +NS  + F +  NFD+++
Sbjct: 688 INDLELRGIVINSLCKLFTKFSNFDYLF 715


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,571,399
Number of Sequences: 5004
Number of extensions: 46245
Number of successful extensions: 91
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)