Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0317
         (761 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0668 - 5682664-5682916,5684542-5684576,5684643-5684693,568...    29   4.0  

>12_01_0668 -
           5682664-5682916,5684542-5684576,5684643-5684693,
           5685362-5685505,5685981-5686265,5686369-5686441,
           5687123-5687343,5687447-5687524,5687626-5687688,
           5688700-5688900
          Length = 467

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 13/42 (30%), Positives = 29/42 (69%)
 Frame = -2

Query: 190 WI*N*NRCPGQITQRKIERLSIVSQQGLYCHYVNIIGTSYVI 65
           W+ + + C   I+Q++I+RLS +++  L C+Y+ ++ T+ V+
Sbjct: 393 WLTSGSNCHCYISQQEIKRLSCMAKCALACYYM-LVPTASVL 433


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,847,651
Number of Sequences: 37544
Number of extensions: 236536
Number of successful extensions: 324
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 324
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)