Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0317
         (761 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20373| Best HMM Match : RDD (HMM E-Value=6.8e-12)                   29   3.1  
SB_14717| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  

>SB_20373| Best HMM Match : RDD (HMM E-Value=6.8e-12)
          Length = 434

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 13/21 (61%), Positives = 16/21 (76%)
 Frame = +2

Query: 470 ELCNFDFIYFTFESVFNIFYN 532
           EL +F F+YFT   VF+IFYN
Sbjct: 262 ELLDFLFLYFTKFLVFSIFYN 282


>SB_14717| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 110

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
 Frame = -1

Query: 413 LVFTFWFIKYFLHVKNFFFSISAAKT---YSDLCVYNNHTN 300
           LV  FW IK    ++NFFF++ A+KT    ++   Y  HT+
Sbjct: 14  LVDDFWLIK---KMQNFFFNLQASKTKQHITETSSYFTHTH 51


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,942,925
Number of Sequences: 59808
Number of extensions: 294234
Number of successful extensions: 436
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 436
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)