Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0317
         (761 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39998-5|AAK71421.2|  408|Caenorhabditis elegans Gustatory recep...    30   2.1  
Z66562-4|CAA91465.1|  258|Caenorhabditis elegans Hypothetical pr...    28   8.3  

>U39998-5|AAK71421.2|  408|Caenorhabditis elegans Gustatory receptor
           family protein 5 protein.
          Length = 408

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +2

Query: 443 LNSKTRRFYELCNFDFIYFTFESVFNIFYNLK 538
           L SKTR+FY+   +  I +   ++FN+ Y+ K
Sbjct: 138 LRSKTRKFYDGARWFIILYVITTLFNVVYSGK 169


>Z66562-4|CAA91465.1|  258|Caenorhabditis elegans Hypothetical
           protein F42E11.3 protein.
          Length = 258

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -1

Query: 473 VHRTVSFLNSVKSPFGX*N*LVFTFWFIKYFLHVKNFFFS 354
           V R + +L  +   FG    L +TF+ I + +H K FF S
Sbjct: 19  VFRKIHYLELLSQMFGF---LFYTFYLIIFLVHGKTFFIS 55


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,980,703
Number of Sequences: 27780
Number of extensions: 247792
Number of successful extensions: 447
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 447
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)