Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0315
         (508 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    25   6.5  
SPBC800.14c |||DUF1772 family protein|Schizosaccharomyces pombe|...    25   6.5  

>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -1

Query: 205 IIPPSLFLPSIMAVCSVM*IFL*HSFDKAHA 113
           + PP+L  PS+++ C++  IF  H  D   A
Sbjct: 235 VYPPTLIWPSVLSSCALFKIF--HDNDNTKA 263


>SPBC800.14c |||DUF1772 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 160

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 24  PSILITGXMXGX*LTLSERRYSLFNLEHHAACALSNEC 137
           P + I   +    L+ SER+ S+F+ + +A  ALS  C
Sbjct: 57  PFLAIANALVQGYLSYSERKRSIFSSKLYAISALSGLC 94


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,451,383
Number of Sequences: 5004
Number of extensions: 21257
Number of successful extensions: 33
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)