Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0315
         (508 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   5.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   5.6  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   7.3  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   7.3  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +1

Query: 88   RFLISNITPRVLYQTSV 138
            RF+++N+ P  +YQ  V
Sbjct: 1556 RFVVTNLQPSSVYQLKV 1572


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +1

Query: 88   RFLISNITPRVLYQTSV 138
            RF+++N+ P  +YQ  V
Sbjct: 1552 RFVVTNLQPSSVYQLKV 1568


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 7/17 (41%), Positives = 8/17 (47%)
 Frame = +2

Query: 179 WKKQRWRNNTVXLTKLF 229
           WK  +W    V  T LF
Sbjct: 225 WKGVKWTGKVVYFTSLF 241


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 7/17 (41%), Positives = 8/17 (47%)
 Frame = +2

Query: 179 WKKQRWRNNTVXLTKLF 229
           WK  +W    V  T LF
Sbjct: 278 WKGVKWTGKVVYFTSLF 294


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,927
Number of Sequences: 438
Number of extensions: 1724
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13986774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)