Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0314
         (881 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    27   0.26 
DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    23   2.4  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    22   7.3  
AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein p...    22   7.3  
AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein p...    22   7.3  

>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 26.6 bits (56), Expect = 0.26
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = -2

Query: 160 ANYQDDQSRNGKQKIEAKHEVLYTGHSTFESHCYSIKYYRQIVLLRNK 17
           A++ D     GK + + K+ V+YT H   E       YY + + +R K
Sbjct: 141 ADFADAPDAIGKTRTKDKYRVVYTDHQRVELE--KEFYYSRYITIRRK 186


>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
 Frame = +2

Query: 527 NSPADWADHGL---PIPSTCWLRPRRSMTASSXAAPRTRPTS 643
           N  AD A + +   P+P T     R ++T      P T+PT+
Sbjct: 146 NEEADAASNVISSTPLPPTTSTTTRTTLTTKFTTKPSTKPTN 187


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = -3

Query: 180 EFISALMPTIRMINPVMANRRLKQNMRYFTQDIPP 76
           E  SAL      +     NRR+KQ  R     IPP
Sbjct: 285 EIASALQLNETQVKIWFQNRRMKQKKRMKEGLIPP 319


>AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = -3

Query: 180 EFISALMPTIRMINPVMANRRLKQNMRYFTQDIPP 76
           E  SAL      +     NRR+KQ  R     IPP
Sbjct: 74  EIASALQLNETQVKIWFQNRRMKQKKRMKEGLIPP 108


>AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = -3

Query: 180 EFISALMPTIRMINPVMANRRLKQNMRYFTQDIPP 76
           E  SAL      +     NRR+KQ  R     IPP
Sbjct: 74  EIASALQLNETQVKIWFQNRRMKQKKRMKEGLIPP 108


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,314
Number of Sequences: 336
Number of extensions: 3983
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24410188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)