Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0314
         (881 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M...    30   0.50 
SPAC17G8.07 |||YEATS family protein|Schizosaccharomyces pombe|ch...    26   8.2  
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo...    26   8.2  

>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 685

 Score = 29.9 bits (64), Expect = 0.50
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 372 RWLHEAYGLGRFGVFXILGAQPERFHYSISGRQER 476
           R++HEA+G+  FG         E+FH++ SG  +R
Sbjct: 629 RYVHEAFGMHTFGDSGPAPKLYEKFHFTTSGVAQR 663


>SPAC17G8.07 |||YEATS family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = -2

Query: 238 ENDRSELVEVLIGEVHVRIRVYFSPDAN 155
           E+   E++E   GE  + +R++F+P+A+
Sbjct: 76  ESPPFEVIETGWGEFDIMVRIFFAPEAH 103


>SPCC126.09 |||vacuolar membrane zinc transporter
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 418

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 16/61 (26%), Positives = 30/61 (49%)
 Frame = +2

Query: 77  GGMSCVKYLMFCFNLLFAITGLIILIVGIRAEINSYPYMNFTDENFYKFAPIVLIIVGIM 256
           GG+    +L F + ++FA T  ++LI+ +R  +   P     D +  K    +   +GI+
Sbjct: 351 GGIGSSDFLNFLYGIIFAGTAGMMLILSLRVIL---PEALRHDHSENKRHSFICFTIGIL 407

Query: 257 F 259
           F
Sbjct: 408 F 408


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,336,458
Number of Sequences: 5004
Number of extensions: 63674
Number of successful extensions: 179
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)