Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0314
         (881 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0386 + 18429675-18430679,18431001-18431111,18431139-184311...    29   3.7  
09_06_0111 - 20924838-20924969,20925147-20925290,20925391-209254...    29   3.7  

>12_02_0386 +
           18429675-18430679,18431001-18431111,18431139-18431195,
           18431552-18431589,18431688-18431733,18431811-18431849
          Length = 431

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 250 HYVFIVAFFGCCGAVKENHCMIXTFSV 330
           HY  +V  +G  G ++E HC + T  V
Sbjct: 242 HYACVVDLYGRAGLIEEAHCFVKTMPV 268


>09_06_0111 -
           20924838-20924969,20925147-20925290,20925391-20925453,
           20925993-20926116,20926779-20927005,20927088-20927255,
           20927348-20927498,20927567-20927889
          Length = 443

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 17/72 (23%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
 Frame = +1

Query: 355 ELAVGIAGYMKHTDLEDSGFXKFWGRNLNA------SITXYPVDKNVQKTIDIIPTDXXA 516
           ELA GIA  +K+  + D+ F ++  +N+ A      S   Y + ++ +   +++  D   
Sbjct: 257 ELASGIAEVVKYGLIRDAPFFEWQEKNMPALLAREPSALAYAIKRSCENKAEVVAQDEKE 316

Query: 517 AGIKQSGRLGRS 552
           +G++ +  LG +
Sbjct: 317 SGLRATLNLGHT 328


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,540,397
Number of Sequences: 37544
Number of extensions: 453729
Number of successful extensions: 1034
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1034
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)