Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0314
         (881 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81128-2|CAB03397.2|  232|Caenorhabditis elegans Hypothetical pr...    53   3e-07
Z68880-6|CAA93092.1|  308|Caenorhabditis elegans Hypothetical pr...    44   2e-04
U28740-6|AAA68322.4|  317|Caenorhabditis elegans Tetraspanin fam...    41   0.001
Z69790-4|CAA93655.1|  282|Caenorhabditis elegans Hypothetical pr...    40   0.002
U41545-5|AAK39137.2|  243|Caenorhabditis elegans Tetraspanin fam...    36   0.029
U41028-2|AAA82355.1|  233|Caenorhabditis elegans Tetraspanin fam...    36   0.051
AL110487-3|CAB54426.1|  223|Caenorhabditis elegans Hypothetical ...    35   0.089
AL132948-5|CAC51071.1|  321|Caenorhabditis elegans Hypothetical ...    32   0.47 
Z92824-4|CAB07307.2|  395|Caenorhabditis elegans B0413.2 protein.      32   0.62 
Z81127-9|CAB03394.3|  735|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z81056-11|CAB02911.3|  735|Caenorhabditis elegans Hypothetical p...    30   1.9  
U80814-2|AAB37993.1|  335|Caenorhabditis elegans Serpentine rece...    30   2.5  

>Z81128-2|CAB03397.2|  232|Caenorhabditis elegans Hypothetical
           protein T23D8.2 protein.
          Length = 232

 Score = 52.8 bits (121), Expect = 3e-07
 Identities = 26/77 (33%), Positives = 40/77 (51%)
 Frame = +1

Query: 262 IVAFFGCCGAVKENHCMIXTFSVFLLIIFVAELAVGIAGYMKHTDLEDSGFXKFWGRNLN 441
           ++ F GCCGA++EN+C+  +F+V L ++   E+A  I GY  H    DS F    G  L 
Sbjct: 65  LLGFLGCCGAIRENYCLTVSFAVLLALLITCEIAAVIIGYALH----DS-FRLGIGNQLQ 119

Query: 442 ASITXYPVDKNVQKTID 492
             +  Y   + V+   D
Sbjct: 120 TGMVRYHESRGVESAWD 136



 Score = 38.7 bits (86), Expect = 0.005
 Identities = 21/61 (34%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
 Frame = +2

Query: 71  LEGGMSCVKYLMFCFNLLFAITGLIILIVGIRAEINSYPYMNFT-DENFYKFAPIVLIIV 247
           +EGG++ VKYL+F  NL+  + GL ++IVG   ++     ++   DE      PI+L+++
Sbjct: 2   VEGGVTIVKYLLFLANLVLWVGGLSLIIVGSILQLKFDNVLDILGDERL--ATPILLLVI 59

Query: 248 G 250
           G
Sbjct: 60  G 60


>Z68880-6|CAA93092.1|  308|Caenorhabditis elegans Hypothetical
           protein T14G10.6 protein.
          Length = 308

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
 Frame = +1

Query: 259 FIVAFFGCCGAVKENHCMIXTFSVFLLIIFVAELAVGIAGYMKHTDLEDSGFXKFWGRN- 435
           FI+ F GC G+++EN   +  +S  L ++ +AE + G+  Y     L++      + RN 
Sbjct: 96  FIIGFSGCVGSLRENTSFLTFYSTLLGLLLIAEFSAGVFAYACRDQLDN------YIRNL 149

Query: 436 LNASITXYPVDKNVQKTIDIIPTDXXAAGI 525
           LN  +  Y  D ++Q  ID +       GI
Sbjct: 150 LNDVVVGYRDDPDLQLLIDSMQETWMCCGI 179



 Score = 38.3 bits (85), Expect = 0.007
 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
 Frame = +2

Query: 89  CVKYLMFCFNLLFAITGLIILIVGIRAEINSYPYMNFTDE--NFYKFAPIVLIIVGIM 256
           CVKY +F FN++F + G  +L+ G+ A+I    ++N   +    Y      L+IVG +
Sbjct: 37  CVKYSVFSFNVIFFLLGFGLLLFGVWAQIEKNTFVNMLSKASKLYLDPTWPLLIVGFL 94


>U28740-6|AAA68322.4|  317|Caenorhabditis elegans Tetraspanin family
           protein 11 protein.
          Length = 317

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 18/53 (33%), Positives = 32/53 (60%)
 Frame = +1

Query: 256 VFIVAFFGCCGAVKENHCMIXTFSVFLLIIFVAELAVGIAGYMKHTDLEDSGF 414
           V +VAF GCCGA KE   ++  +S  L++I   ++A  I  ++ H+ + ++ F
Sbjct: 93  VIVVAFLGCCGAAKEWRPLLCCYSSCLMLILAIQIAATIYAFL-HSHMFENDF 144



 Score = 33.1 bits (72), Expect = 0.27
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = +2

Query: 62  TMALEGGMSCVKYLMFCFNLLFAITGLIILIVGIRAEINSYPYMN 196
           TM L      +K+ +F FNL+F + GLI L +G+   ++ Y   N
Sbjct: 8   TMPLSCTARALKFSLFIFNLVFLLCGLICLGIGLWLVLDKYAIDN 52


>Z69790-4|CAA93655.1|  282|Caenorhabditis elegans Hypothetical
           protein F33C8.3 protein.
          Length = 282

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +1

Query: 256 VFIVAFFGCCGAVKENHCMIXTFSVFLLIIFVAELAVGIAGYMKHTDLE 402
           + +V +FGC GA K N C +  F   L++ F  ELA  +  + K   ++
Sbjct: 67  IILVGYFGCIGAWKMNQCALAFFCCILILAFFLELAAAVTLFHKQEHIK 115


>U41545-5|AAK39137.2|  243|Caenorhabditis elegans Tetraspanin family
           protein 17 protein.
          Length = 243

 Score = 36.3 bits (80), Expect = 0.029
 Identities = 18/53 (33%), Positives = 30/53 (56%)
 Frame = +1

Query: 211 LLQVRSDRSHHCRHYVFIVAFFGCCGAVKENHCMIXTFSVFLLIIFVAELAVG 369
           LL+  +  S  C     +V F G CGAV  +  ++  F +FL+  F+A++A+G
Sbjct: 22  LLKASAYVSLVCGCAQLLVGFLGLCGAVNRSRFLLLAFVMFLIGTFLADVAMG 74


>U41028-2|AAA82355.1|  233|Caenorhabditis elegans Tetraspanin family
           protein 9 protein.
          Length = 233

 Score = 35.5 bits (78), Expect = 0.051
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +1

Query: 256 VFIVAFFGCCGAVKENHCMIXTFSVFLLIIFVAELAVGI 372
           +F+V FFGCCGA  E+  ++  F   ++I+   EL   +
Sbjct: 78  LFLVGFFGCCGAGCESPVLLGLFIFIIVILTAVELGATV 116


>AL110487-3|CAB54426.1|  223|Caenorhabditis elegans Hypothetical
           protein Y39E4B.4 protein.
          Length = 223

 Score = 34.7 bits (76), Expect = 0.089
 Identities = 14/42 (33%), Positives = 27/42 (64%)
 Frame = +1

Query: 262 IVAFFGCCGAVKENHCMIXTFSVFLLIIFVAELAVGIAGYMK 387
           I+ F G  GAV  +  ++  + +F++I+F+ E+A+GI   +K
Sbjct: 83  IIGFVGVIGAVIRSKYLLAPYFLFMVILFLLEIAIGITVLVK 124


>AL132948-5|CAC51071.1|  321|Caenorhabditis elegans Hypothetical
           protein Y39B6A.6 protein.
          Length = 321

 Score = 32.3 bits (70), Expect = 0.47
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +1

Query: 256 VFIVAFFGCCGAVKENHCMIXTFSVFLLIIFVAELAVGI 372
           + +VA  GCCG    +   +  +S+ + ++ VA L+ GI
Sbjct: 124 MMVVAMLGCCGITGRSRPFLIIYSMVVFLLLVATLSCGI 162


>Z92824-4|CAB07307.2|  395|Caenorhabditis elegans B0413.2 protein.
          Length = 395

 Score = 31.9 bits (69), Expect = 0.62
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +1

Query: 256 VFIVAFFGCCGAVKENHCMIXTFSVFLLIIFVAELAVGI 372
           + +VA  GCCG    +   +  +S+ + ++ VA L+ GI
Sbjct: 235 MMVVAMXGCCGITGRSRPFLIIYSMVVFLLLVATLSCGI 273


>Z81127-9|CAB03394.3|  735|Caenorhabditis elegans Hypothetical
           protein F09F3.9 protein.
          Length = 735

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 27/93 (29%), Positives = 37/93 (39%), Gaps = 4/93 (4%)
 Frame = +1

Query: 325 SVFLLIIFVAELAVGIAGYMKHTDLEDSGFXKFWGRNLNASITXYPVD-KNVQKTIDIIP 501
           SVFLL  F+        GY+K    + S F   WG    A +T  P    +  + +  IP
Sbjct: 86  SVFLLRHFLKYFYFSYKGYLKENPKKPSFFTILWGILRKAVLTIAPPQLSSCDRLLPNIP 145

Query: 502 TDXXAAGIKQ---SGRLGRSRSAHTEHVLAPXQ 591
                  +KQ   S +L  S   HTE +    Q
Sbjct: 146 LPALKNTVKQYVDSMQLVLSEEDHTELIKTSNQ 178


>Z81056-11|CAB02911.3|  735|Caenorhabditis elegans Hypothetical
           protein F09F3.9 protein.
          Length = 735

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 27/93 (29%), Positives = 37/93 (39%), Gaps = 4/93 (4%)
 Frame = +1

Query: 325 SVFLLIIFVAELAVGIAGYMKHTDLEDSGFXKFWGRNLNASITXYPVD-KNVQKTIDIIP 501
           SVFLL  F+        GY+K    + S F   WG    A +T  P    +  + +  IP
Sbjct: 86  SVFLLRHFLKYFYFSYKGYLKENPKKPSFFTILWGILRKAVLTIAPPQLSSCDRLLPNIP 145

Query: 502 TDXXAAGIKQ---SGRLGRSRSAHTEHVLAPXQ 591
                  +KQ   S +L  S   HTE +    Q
Sbjct: 146 LPALKNTVKQYVDSMQLVLSEEDHTELIKTSNQ 178


>U80814-2|AAB37993.1|  335|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 8 protein.
          Length = 335

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 17/56 (30%), Positives = 29/56 (51%)
 Frame = +1

Query: 259 FIVAFFGCCGAVKENHCMIXTFSVFLLIIFVAELAVGIAGYMKHTDLEDSGFXKFW 426
           F+V  F C  A+  +  +I T+SV L+ I +  + V I G++    +  SG   F+
Sbjct: 20  FLVNLFLCYVALFHSPPIIRTYSVILINITLTNIGVCITGFLLQERIIQSGKSLFY 75


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,774,701
Number of Sequences: 27780
Number of extensions: 374772
Number of successful extensions: 1168
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1071
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1168
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)