Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0314
(881 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF274024-1|AAF90150.1| 232|Apis mellifera tetraspanin F139 prot... 60 3e-11
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 22 8.6
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 22 8.6
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 22 8.6
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 22 8.6
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 22 8.6
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 22 8.6
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 22 8.6
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 22 8.6
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 22 8.6
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 22 8.6
>AF274024-1|AAF90150.1| 232|Apis mellifera tetraspanin F139
protein.
Length = 232
Score = 60.1 bits (139), Expect = 3e-11
Identities = 20/43 (46%), Positives = 34/43 (79%)
Frame = +1
Query: 256 VFIVAFFGCCGAVKENHCMIXTFSVFLLIIFVAELAVGIAGYM 384
+F+++FFGCCGA++E+HCM TF+ FLL I + ++AV + ++
Sbjct: 62 IFVISFFGCCGAIRESHCMTITFASFLLFILLVQIAVAVYAFI 104
Score = 39.5 bits (88), Expect = 4e-05
Identities = 21/57 (36%), Positives = 32/57 (56%)
Frame = +2
Query: 80 GMSCVKYLMFCFNLLFAITGLIILIVGIRAEINSYPYMNFTDENFYKFAPIVLIIVG 250
GM +KYL+F FN +FA+ GL IL +G+ + ++ E F I LI++G
Sbjct: 4 GMGMIKYLLFIFNFVFAVCGLGILTLGVLIHLQILG-VSKQIETGLAFPSITLIVLG 59
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.8 bits (44), Expect = 8.6
Identities = 5/11 (45%), Positives = 10/11 (90%)
Frame = +1
Query: 85 VLCKVPHVLLQ 117
+LC+ PH+++Q
Sbjct: 451 ILCRAPHIIVQ 461
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.8 bits (44), Expect = 8.6
Identities = 5/11 (45%), Positives = 10/11 (90%)
Frame = +1
Query: 85 VLCKVPHVLLQ 117
+LC+ PH+++Q
Sbjct: 451 ILCRAPHIIVQ 461
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.8 bits (44), Expect = 8.6
Identities = 5/11 (45%), Positives = 10/11 (90%)
Frame = +1
Query: 85 VLCKVPHVLLQ 117
+LC+ PH+++Q
Sbjct: 451 ILCRAPHIIVQ 461
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.8 bits (44), Expect = 8.6
Identities = 5/11 (45%), Positives = 10/11 (90%)
Frame = +1
Query: 85 VLCKVPHVLLQ 117
+LC+ PH+++Q
Sbjct: 451 ILCRAPHIIVQ 461
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.8 bits (44), Expect = 8.6
Identities = 5/11 (45%), Positives = 10/11 (90%)
Frame = +1
Query: 85 VLCKVPHVLLQ 117
+LC+ PH+++Q
Sbjct: 451 ILCRAPHIIVQ 461
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.8 bits (44), Expect = 8.6
Identities = 5/11 (45%), Positives = 10/11 (90%)
Frame = +1
Query: 85 VLCKVPHVLLQ 117
+LC+ PH+++Q
Sbjct: 451 ILCRAPHIIVQ 461
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 8.6
Identities = 5/11 (45%), Positives = 10/11 (90%)
Frame = +1
Query: 85 VLCKVPHVLLQ 117
+LC+ PH+++Q
Sbjct: 519 ILCRAPHIIVQ 529
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 8.6
Identities = 5/11 (45%), Positives = 10/11 (90%)
Frame = +1
Query: 85 VLCKVPHVLLQ 117
+LC+ PH+++Q
Sbjct: 519 ILCRAPHIIVQ 529
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 21.8 bits (44), Expect = 8.6
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -2
Query: 415 KTPNLPSPYASCNQRCPQPV 356
K+P L SP A + RCP +
Sbjct: 465 KSPVLRSPPAFSHSRCPPEI 484
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 21.8 bits (44), Expect = 8.6
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -2
Query: 415 KTPNLPSPYASCNQRCPQPV 356
K+P L SP A + RCP +
Sbjct: 465 KSPVLRSPPAFSHSRCPPEI 484
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,306
Number of Sequences: 438
Number of extensions: 4700
Number of successful extensions: 15
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28644972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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