Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0314
         (881 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g32400.2 68414.m03998 senescence-associated family protein co...    30   2.4  
At1g32400.1 68414.m03997 senescence-associated family protein co...    30   2.4  
At1g63260.2 68414.m07151 senescence-associated family protein si...    29   5.4  
At1g63260.1 68414.m07152 senescence-associated family protein si...    29   5.4  

>At1g32400.2 68414.m03998 senescence-associated family protein
           contains Pfam profile PF00335: Tetraspanin family
          Length = 280

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 11/43 (25%), Positives = 25/43 (58%)
 Frame = +1

Query: 256 VFIVAFFGCCGAVKENHCMIXTFSVFLLIIFVAELAVGIAGYM 384
           +F+++  GC G    + C +  +S+ L+++ + EL  G A ++
Sbjct: 92  LFVISCCGCVGTCSRSVCCLSCYSLLLILLILVEL--GFAAFI 132


>At1g32400.1 68414.m03997 senescence-associated family protein
           contains Pfam profile PF00335: Tetraspanin family
          Length = 280

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 11/43 (25%), Positives = 25/43 (58%)
 Frame = +1

Query: 256 VFIVAFFGCCGAVKENHCMIXTFSVFLLIIFVAELAVGIAGYM 384
           +F+++  GC G    + C +  +S+ L+++ + EL  G A ++
Sbjct: 92  LFVISCCGCVGTCSRSVCCLSCYSLLLILLILVEL--GFAAFI 132


>At1g63260.2 68414.m07151 senescence-associated family protein
           similar to senescence-associated protein 5 [Hemerocallis
           hybrid cultivar] gi|3551954|gb|AAC34855
          Length = 258

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 10/44 (22%), Positives = 24/44 (54%)
 Frame = +1

Query: 253 YVFIVAFFGCCGAVKENHCMIXTFSVFLLIIFVAELAVGIAGYM 384
           ++F+++  G  GA K +  ++  +   LLI+ +A L   +  ++
Sbjct: 52  FIFLISIIGFLGACKRSVALLWIYLAVLLIVLIAILVFTVLAFI 95


>At1g63260.1 68414.m07152 senescence-associated family protein
           similar to senescence-associated protein 5 [Hemerocallis
           hybrid cultivar] gi|3551954|gb|AAC34855
          Length = 284

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 10/44 (22%), Positives = 24/44 (54%)
 Frame = +1

Query: 253 YVFIVAFFGCCGAVKENHCMIXTFSVFLLIIFVAELAVGIAGYM 384
           ++F+++  G  GA K +  ++  +   LLI+ +A L   +  ++
Sbjct: 52  FIFLISIIGFLGACKRSVALLWIYLAVLLIVLIAILVFTVLAFI 95


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,750,570
Number of Sequences: 28952
Number of extensions: 348007
Number of successful extensions: 802
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2077687200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)