Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0312
         (862 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc...    30   0.37 
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    27   2.6  
SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc...    27   4.5  
SPBC651.02 |||nitrilase |Schizosaccharomyces pombe|chr 2|||Manual      26   7.9  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    26   7.9  

>SPBC336.12c |cdc10||MBF transcription factor complex subunit
           Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 30.3 bits (65), Expect = 0.37
 Identities = 22/67 (32%), Positives = 33/67 (49%)
 Frame = +3

Query: 45  SGFLIKVPTAVNLPEPSESVPVNLVTVQKLLLPLFEDVCEISKDPDILKSAQEFLSLLDE 224
           + F I V  A+  PE S+   V+L++ + L       V    K  DI+ S  + +S LD+
Sbjct: 521 ANFGIFVENALKQPEDSKQTKVSLMS-ENLSSKEKTAVPPRQKSRDIIASVTDVISSLDK 579

Query: 225 DFTDPEA 245
           DF D  A
Sbjct: 580 DFQDEMA 586


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
 Frame = +3

Query: 138 LPLFEDVCEISKDPDILKSAQEFLSLLDEDFTDPEAISNLKN*NP---KDFYLKAKFSQS 308
           +P  E  C + K+PDI+ S+ +   LLD  F   +  SN    +    ++F +KA  S S
Sbjct: 529 IPYHELFCALLKNPDIISSSVKQSLLLDGFFRWSQHCSNFNKESMLSLREFIMKALASTS 588


>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
           Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = +3

Query: 51  FLIKVPTAVNLPEPSESVPV--NLVTVQKLLLPLFED 155
           F  ++P   N P+ S SVPV   L    KL L L ED
Sbjct: 698 FDFRIPCNTNNPDASTSVPVLEELQLRNKLFLTLLED 734


>SPBC651.02 |||nitrilase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 276

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = +2

Query: 242 SDIEFKELKSKGFLPK--GEIFTEYNKSHLDELEI 340
           S ++ K L S  F+    GEI + Y+K+HL ++EI
Sbjct: 88  SKVKNKLLNSSLFIEPLHGEIISRYSKAHLFDVEI 122


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -1

Query: 196 ADFNMSGSLLISQTSSKSGNSSF*TVTKLTGTDSDGS 86
           ADF +  S+ + + ++K    +F  V ++TG+ S GS
Sbjct: 322 ADFIVDWSMYVRECAAKYNKKNFLIVGEVTGSSSYGS 358


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,153,781
Number of Sequences: 5004
Number of extensions: 59145
Number of successful extensions: 124
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)