Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0312
         (862 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0179 - 17604561-17606435                                         31   1.6  
12_02_0425 - 18954427-18955020,18955330-18955350,18956380-18956490     29   6.3  
02_03_0167 - 15923872-15925683                                         29   6.3  

>06_03_0179 - 17604561-17606435
          Length = 624

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +2

Query: 68  YRCKSTRAIGIGSRQLGDCSKT--TIAAFRGCLRNQQRSGHIEICPGILKLIR 220
           Y C +TR  G+     GDCS+T   + A +G    ++ +G +++  G   L R
Sbjct: 557 YTCAATRCFGVAGPAAGDCSETGADVLAEKGLTAKERWTG-VQVLFGFFLLYR 608


>12_02_0425 - 18954427-18955020,18955330-18955350,18956380-18956490
          Length = 241

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
 Frame = +3

Query: 36  IGSSGFLIKVPTAVNLPEPSESVPVNL---VTVQKLLLPLFEDVCEISKDPDILKSAQEF 206
           I + GFL ++  A  +  P+ S+  N    +  Q+L + LF D CE+S D    K  +  
Sbjct: 101 IVNMGFLDRLKLAWKIIFPAPSIKENSNANIAKQRLKMILFSDRCEVS-DEAKKKIVENI 159

Query: 207 LSLLDEDFTDPEAISNLK 260
           +  L E F + E+  N++
Sbjct: 160 VEALSE-FVEIESRDNVQ 176


>02_03_0167 - 15923872-15925683
          Length = 603

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +2

Query: 233 GS*SDIEFKELKSKGFLPKGEIFT 304
           GS + + FKE+K+KGF P G  FT
Sbjct: 438 GSEALVLFKEMKNKGFQPDGIAFT 461


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,140,871
Number of Sequences: 37544
Number of extensions: 373294
Number of successful extensions: 873
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)