Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0312
         (862 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31982| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.52 
SB_15825| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.91 
SB_28433| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_2155| Best HMM Match : RepA1_leader (HMM E-Value=0.86)              29   4.9  

>SB_31982| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 495

 Score = 32.3 bits (70), Expect = 0.52
 Identities = 16/40 (40%), Positives = 25/40 (62%)
 Frame = +3

Query: 570 ASGQELXLSDXXEVEXNSYTIYANYTGKFPWKITTSLNLA 689
           A GQ++ LS+  +VE  + ++  N+ G+FP   T S NLA
Sbjct: 29  ADGQQVALSNLAQVEERAASLLINHIGQFP-AATLSFNLA 67


>SB_15825| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 168

 Score = 31.5 bits (68), Expect = 0.91
 Identities = 18/61 (29%), Positives = 32/61 (52%)
 Frame = +3

Query: 21  VCAFFIGSSGFLIKVPTAVNLPEPSESVPVNLVTVQKLLLPLFEDVCEISKDPDILKSAQ 200
           V ++FI   G +  +  A+ + E +  V VN +++  +L PL+E     S  PD  K+ Q
Sbjct: 55  VVSYFIMCKGAITSMTRALAIDEAAYGVRVNSLSIGNVLTPLWES--NASATPDYKKAIQ 112

Query: 201 E 203
           +
Sbjct: 113 D 113


>SB_28433| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 536

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
 Frame = +3

Query: 24  CAFFIGSSGFLIKVPTAVNLPEPSESVPVNLVTVQKLLLPLFEDVCEISKDPDILKSAQE 203
           C   + S+GFL  +     LPE   S+P  L ++ + L  L E    +S  P++L S  E
Sbjct: 135 CQARLFSTGFLSPIWVISPLPEGVSSLPEGLSSLPEGLSSLPEG---LSSLPEVLSSLPE 191

Query: 204 FLSLLDEDFTD-PE 242
            LS L E  +  PE
Sbjct: 192 VLSSLPEGLSSLPE 205


>SB_2155| Best HMM Match : RepA1_leader (HMM E-Value=0.86)
          Length = 427

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +2

Query: 668 NDESKFGGTFRGRRRAWNTF*LSKENXSQRRGSIMAXVH 784
           N + K GG F+G  +  +   LS +  S R+G +M   H
Sbjct: 94  NKKEKLGGLFKGLAKGVDEVLLSGQKDSVRKGDVMTRSH 132


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,683,916
Number of Sequences: 59808
Number of extensions: 412273
Number of successful extensions: 914
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2455286845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)