Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0312
         (862 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g70320.1 68414.m08090 ubiquitin-protein ligase 2 (UPL2) nearl...    29   5.3  
At1g55860.1 68414.m06406 ubiquitin-protein ligase 1 (UPL1) nearl...    29   5.3  
At2g01910.1 68415.m00125 microtubule associated protein (MAP65/A...    28   9.2  
At1g66800.1 68414.m07593 cinnamyl-alcohol dehydrogenase family /...    28   9.2  

>At1g70320.1 68414.m08090 ubiquitin-protein ligase 2 (UPL2) nearly
            identical to ubiquitin-protein ligase 2 [Arabidopsis
            thaliana] GI:7108523; E3, HECT-domain protein family;
            similar to ubiquitin-protein ligase 2 GI:7108523 from
            [Arabidopsis thaliana]
          Length = 3658

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +3

Query: 663  KITTSLNLAVLFVEDVGXGTLFNYPRK 743
            ++T S  LA+ F+E+ G  +LFN P+K
Sbjct: 1581 RLTKSHALAIQFLENGGLSSLFNLPKK 1607


>At1g55860.1 68414.m06406 ubiquitin-protein ligase 1 (UPL1) nearly
            identical to ubiquitin-protein ligase 1 [Arabidopsis
            thaliana] GI:7108521; E3, HECT-domain protein family;
            similar to GI:7108521, GB:AAF36454 from [Arabidopsis
            thaliana]
          Length = 3891

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +3

Query: 663  KITTSLNLAVLFVEDVGXGTLFNYPRK 743
            ++T S  LA+ F+E+ G  +LFN P+K
Sbjct: 1789 RLTKSHALAIQFLENGGLSSLFNLPKK 1815


>At2g01910.1 68415.m00125 microtubule associated protein
           (MAP65/ASE1) family protein low similarity to protein
           regulating cytokinesis 1 (PRC1) [Homo sapiens]
           GI:2865521; contains Pfam profile PF03999: Microtubule
           associated protein (MAP65/ASE1 family)
          Length = 567

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = +3

Query: 150 EDVCEISK-DPDILKSAQEFLSLLDEDFTDP-EAISNLK 260
           ED+C ++   PD   SA++  +L+D    DP E ++N++
Sbjct: 295 EDLCRLTHIQPDTSTSAEKSTALIDSGLVDPSELLANIE 333


>At1g66800.1 68414.m07593 cinnamyl-alcohol dehydrogenase family /
           CAD family similar to cinnamyl alcohol dehydrogenase
           [Eucalyptus gunnii] GI:1143445, CPRD14 protein, Vigna
           unguiculata [gi:1854445]
          Length = 319

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 108 VNLVTVQKLLLPLFEDVCEISKD 176
           V +  +QKLL  LF D+C + KD
Sbjct: 252 VTMKDIQKLLHELFPDLCRVDKD 274


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,389,777
Number of Sequences: 28952
Number of extensions: 309436
Number of successful extensions: 812
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2009406400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)