Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0311
         (893 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    51   1e-08
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    22   5.6  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           22   7.5  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 50.8 bits (116), Expect = 1e-08
 Identities = 26/67 (38%), Positives = 38/67 (56%)
 Frame = +1

Query: 73  PIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLERGVEIVIATPGR 252
           P+V++++PTRELA QI     +F  +  V+   I+GG     Q   +  G  I++ATPGR
Sbjct: 236 PVVVIMSPTRELAIQIADQGKKFAYNSTVKVAVIYGGTSTNHQRGRILGGCHILVATPGR 295

Query: 253 LLIFWRR 273
           L  F  R
Sbjct: 296 LKDFVNR 302



 Score = 46.4 bits (105), Expect = 3e-07
 Identities = 25/57 (43%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
 Frame = +3

Query: 258 DFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKII-EQIRP---DRQVLMWSATW 416
           DF+ +   +     Y VLDEADRMLDMGF   + +++  Q  P   +RQ LM+SAT+
Sbjct: 298 DFVNRGNVSFNSLKYFVLDEADRMLDMGFLGDVEEMLSHQSMPATGERQTLMFSATF 354


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = +2

Query: 515 PQHPPDC 535
           P+HPPDC
Sbjct: 357 PRHPPDC 363


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -1

Query: 731 WLXSCPPRGMPRXRQPAT 678
           WL S  PR +P    P+T
Sbjct: 24  WLNSQQPRNVPNFAAPST 41


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,153
Number of Sequences: 336
Number of extensions: 4664
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24823920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)