Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0311
(893 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 120 4e-28
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 78 2e-15
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 67 3e-12
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 59 1e-09
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 56 7e-09
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 55 1e-08
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 52 8e-08
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 52 1e-07
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 51 2e-07
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 50 6e-07
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 49 8e-07
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 48 2e-06
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 46 5e-06
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 46 5e-06
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 46 5e-06
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 43 7e-05
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 42 1e-04
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 42 1e-04
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 40 4e-04
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 37 0.004
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 34 0.024
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 34 0.031
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c... 33 0.041
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 27 3.6
SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces pom... 26 6.3
SPAPB24D3.04c |mag1||DNA-3-methyladenine glycosylase Mag1|Schizo... 26 8.3
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 120 bits (288), Expect = 4e-28
Identities = 85/231 (36%), Positives = 116/231 (50%), Gaps = 2/231 (0%)
Frame = +1
Query: 19 LPAIVHIINQPRLLRDDGPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGP 198
LPAIVHI QP L DGPIVLVLAPTRELA QIQQ +FG+S +RNTC++GG P+GP
Sbjct: 178 LPAIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGP 237
Query: 199 QGRCLERGVEIVIATPGRLLIFWRRRQRTCADALIWCWMRLIECWTWAXXXXXXXXXXXX 378
Q R L RGVEI IATPGR L+ +T + + + +
Sbjct: 238 QIRDLIRGVEICIATPGR-LLDMLDSNKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQ 296
Query: 379 XXIDKY*CGQLHXXXXXXXXEVQNLAEEFLHDYIQXNIGSLELWPTTTSSRLLMFVRNGR 558
D+ Q EVQ LA ++L+DYIQ +GSL+L + +++ V N
Sbjct: 297 IRPDR----QTVMFSATWPKEVQRLARDYLNDYIQVTVGSLDLAASHNIKQIVEVVDNAD 352
Query: 559 RMXN*LHCSLXYLQRGEPKTIIFAENQKXG--XTXYVKGDXXVAGWRXLGI 705
+ L+ + K +IF ++ T +++ D GW L I
Sbjct: 353 KRARLGKDIEEVLKDRDNKVLIFTGTKRVADDITRFLRQD----GWPALAI 399
Score = 97.1 bits (231), Expect = 3e-21
Identities = 52/106 (49%), Positives = 66/106 (62%)
Frame = +3
Query: 255 IDFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWAXPPGX 434
+D L+ TNLRR TYLVLDEADRMLDMGFEPQIRKI++QIRPDRQ +M+SATW
Sbjct: 257 LDMLDSNKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTVMFSATWPKEVQR 316
Query: 435 XGSXESS*RVPA*LHPXQHWFS*ALANHNILQIVDVCEEWEKNXKL 572
+ + + A+HNI QIV+V + +K +L
Sbjct: 317 LARDYLNDYIQVTVGSLD-----LAASHNIKQIVEVVDNADKRARL 357
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 77.8 bits (183), Expect = 2e-15
Identities = 33/46 (71%), Positives = 40/46 (86%)
Frame = +3
Query: 279 TNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATW 416
TNL RCTYLVLDEADRM D+GFEPQ+ +II IRPDRQ +++SAT+
Sbjct: 564 TNLHRCTYLVLDEADRMFDLGFEPQVMRIINNIRPDRQTVLFSATF 609
Score = 72.9 bits (171), Expect = 6e-14
Identities = 35/81 (43%), Positives = 51/81 (62%)
Frame = +1
Query: 16 ILPAIVHIINQPRLLRDDGPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKG 195
+LP HI +Q L +GPI +++ PTRELA QI + F + +++R C +GGAP
Sbjct: 473 LLPMFRHIKDQRPLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIK 532
Query: 196 PQGRCLERGVEIVIATPGRLL 258
Q L+RG EIV+ TPGR++
Sbjct: 533 DQIADLKRGAEIVVCTPGRMI 553
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 67.3 bits (157), Expect = 3e-12
Identities = 39/90 (43%), Positives = 50/90 (55%), Gaps = 3/90 (3%)
Frame = +1
Query: 16 ILPAIVHIINQPRLLRDD---GPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGA 186
I+P I+ I P L + GP +VLAPTRELAQQIQ N+F + + R + GG
Sbjct: 304 IIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEPLGFRCVSVVGGH 363
Query: 187 PKGPQGRCLERGVEIVIATPGRLLIFWRRR 276
Q + +G IV+ATPGRLL RR
Sbjct: 364 AFEEQSFQMSQGAHIVVATPGRLLDCLERR 393
Score = 52.8 bits (121), Expect = 6e-08
Identities = 22/41 (53%), Positives = 30/41 (73%)
Frame = +3
Query: 255 IDFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQI 377
+D LE+ L +CTY+V+DEADRMLDMGFE + KI+ +
Sbjct: 387 LDCLERRLFVLSQCTYVVMDEADRMLDMGFEDDVNKILSSL 427
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 58.8 bits (136), Expect = 1e-09
Identities = 30/58 (51%), Positives = 40/58 (68%), Gaps = 4/58 (6%)
Frame = +3
Query: 255 IDFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIR----PDRQVLMWSATW 416
+D +++ +L +LVLDEADRMLDMGFEPQIR I+E +RQ LM+SAT+
Sbjct: 317 VDLIDRGRISLANIKFLVLDEADRMLDMGFEPQIRHIVEGADMTSVEERQTLMFSATF 374
Score = 52.8 bits (121), Expect = 6e-08
Identities = 26/62 (41%), Positives = 39/62 (62%)
Frame = +1
Query: 73 PIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLERGVEIVIATPGR 252
P L+LAPTREL QI + + +F VR ++GGA Q R +++G +++ ATPGR
Sbjct: 256 PTTLILAPTRELVCQIHEESRKFCYRSWVRPCAVYGGADIRAQIRQIDQGCDLLSATPGR 315
Query: 253 LL 258
L+
Sbjct: 316 LV 317
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 56.0 bits (129), Expect = 7e-09
Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 5/85 (5%)
Frame = +1
Query: 16 ILPAIVHIINQPRLL--RDDGPIVLVLAPTRELAQQIQQVANEFGQS--IHVRNTC-IFG 180
+LP + +I P+ L R G +++APTREL QQI VAN+ + H +C + G
Sbjct: 196 LLPIVQRLIRLPKNLHTRTSGIYAVIMAPTRELCQQIYNVANKLNNNPLSHWIVSCNVIG 255
Query: 181 GAPKGPQGRCLERGVEIVIATPGRL 255
G K + + +GV I+I TPGRL
Sbjct: 256 GEKKKSEKARIRKGVNILIGTPGRL 280
Score = 38.7 bits (86), Expect = 0.001
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +3
Query: 258 DFLEK-ETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVL 398
D LE E ++ + ++VLDE DR++DMGFE + KI+ + ++
Sbjct: 282 DHLENTEALDVSQVRWVVLDEGDRLMDMGFEETLTKILSYLESQSSII 329
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 55.2 bits (127), Expect = 1e-08
Identities = 27/62 (43%), Positives = 38/62 (61%)
Frame = +1
Query: 73 PIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLERGVEIVIATPGR 252
P VLV++PTRELA Q + N Q +++ ++GGAPK Q R + ++I TPGR
Sbjct: 237 PRVLVVSPTRELAIQTYENLNSLIQGTNLKAVVVYGGAPKSEQARA-AKNASVIIGTPGR 295
Query: 253 LL 258
LL
Sbjct: 296 LL 297
Score = 50.8 bits (116), Expect = 3e-07
Identities = 43/125 (34%), Positives = 59/125 (47%), Gaps = 7/125 (5%)
Frame = +3
Query: 255 IDFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPD------RQVLMWSATW 416
+D + + + + YLVLDEADRMLD GFE IR II PD RQ + +SATW
Sbjct: 297 LDLINDGSIDCSQVGYLVLDEADRMLDTGFEQDIRNIISH-TPDPTRNGSRQTVFFSATW 355
Query: 417 AXPPGXXGSXESS*RVPA*LHPXQHWFS*ALANHNILQIVDVCEE-WEKNXKLITLLTXI 593
P + + P + + A+ NI QIV++ ++ K L LL
Sbjct: 356 --PESVRALAATFLKDPVKITIGSDELA---ASQNITQIVEILDDPRSKERMLDNLLRKH 410
Query: 594 SSEGG 608
S GG
Sbjct: 411 LSSGG 415
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 52.4 bits (120), Expect = 8e-08
Identities = 28/65 (43%), Positives = 37/65 (56%)
Frame = +1
Query: 82 LVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLERGVEIVIATPGRLLI 261
L+LAPTRELAQQIQ+V G ++V GG L+ GV +V+ TPGR+
Sbjct: 91 LILAPTRELAQQIQKVVVALGDLMNVECHACIGGTLVRDDMAALQAGVHVVVGTPGRVHD 150
Query: 262 FWRRR 276
+RR
Sbjct: 151 MIQRR 155
Score = 39.9 bits (89), Expect = 5e-04
Identities = 20/52 (38%), Positives = 28/52 (53%)
Frame = +3
Query: 258 DFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSAT 413
D +++ VLDEAD ML GF+ QI I + + P QV++ SAT
Sbjct: 150 DMIQRRALPTDAVQMFVLDEADEMLSRGFKDQIYDIFQLLPPTAQVVLLSAT 201
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 51.6 bits (118), Expect = 1e-07
Identities = 27/64 (42%), Positives = 40/64 (62%)
Frame = +1
Query: 67 DGPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLERGVEIVIATP 246
+G V++++PTRELA QI VA E + H + GGA + + L +GV +++ATP
Sbjct: 160 NGTGVIIISPTRELALQIFGVAKELLKYHHQTFGIVIGGANRRAEADKLVKGVNLLVATP 219
Query: 247 GRLL 258
GRLL
Sbjct: 220 GRLL 223
Score = 41.5 bits (93), Expect = 2e-04
Identities = 20/43 (46%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Frame = +3
Query: 288 RRCTYLVLDEADRMLDMGFEPQIRKIIEQI-RPDRQVLMWSAT 413
R LV+DEADR+L++GFE ++R+I++ + +RQ L++SAT
Sbjct: 235 RNLRSLVIDEADRILEIGFEDEMRQIMKILPSENRQTLLFSAT 277
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 51.2 bits (117), Expect = 2e-07
Identities = 31/80 (38%), Positives = 40/80 (50%)
Frame = +1
Query: 19 LPAIVHIINQPRLLRDDGPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGP 198
LP I + N P +VLAPTRELA QI + G SI VR+ I GG
Sbjct: 102 LPVIQELWNNPSPF-----FAVVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDMVT 156
Query: 199 QGRCLERGVEIVIATPGRLL 258
Q L + +++ TPGRL+
Sbjct: 157 QAVALSKKPHVLVCTPGRLM 176
Score = 48.8 bits (111), Expect = 1e-06
Identities = 25/54 (46%), Positives = 38/54 (70%), Gaps = 1/54 (1%)
Frame = +3
Query: 255 IDFLEK-ETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSAT 413
+D LE + +L+ YL++DEADR+LDM F P I KI++ I +R+ L++SAT
Sbjct: 176 MDHLENTKGFSLKNLKYLIMDEADRLLDMDFGPIIDKILKIIPHERRTLLFSAT 229
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 49.6 bits (113), Expect = 6e-07
Identities = 27/65 (41%), Positives = 36/65 (55%)
Frame = +1
Query: 82 LVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLERGVEIVIATPGRLLI 261
L+L+PTRELA QIQ V G ++V+ GG G + L+ G +V TPGR+
Sbjct: 93 LILSPTRELAVQIQNVVLALGDHMNVQCHACIGGTSVGNDIKKLDYGQHVVSGTPGRVTD 152
Query: 262 FWRRR 276
RRR
Sbjct: 153 MIRRR 157
Score = 42.3 bits (95), Expect = 9e-05
Identities = 20/52 (38%), Positives = 29/52 (55%)
Frame = +3
Query: 258 DFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSAT 413
D + + R L+LDEAD +L+ GF+ QI I + P QV++ SAT
Sbjct: 152 DMIRRRNLRTRNVKMLILDEADELLNQGFKEQIYDIYRYLPPGTQVVVVSAT 203
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 49.2 bits (112), Expect = 8e-07
Identities = 28/81 (34%), Positives = 42/81 (51%)
Frame = +1
Query: 16 ILPAIVHIINQPRLLRDDGPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKG 195
++P I H+ + L + L+L+P RELA Q +V +F + +R+ I GG
Sbjct: 124 VIPMIEHLKST---LANSNTRALILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVSLE 180
Query: 196 PQGRCLERGVEIVIATPGRLL 258
Q L +IV+ATPGR L
Sbjct: 181 EQFSLLSGKPDIVVATPGRFL 201
Score = 43.6 bits (98), Expect = 4e-05
Identities = 18/38 (47%), Positives = 27/38 (71%)
Frame = +3
Query: 300 YLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSAT 413
Y+V DEADR+ +MGF Q+ +I+ + RQ L++SAT
Sbjct: 216 YVVFDEADRLFEMGFAAQLTEILHALPTSRQTLLFSAT 253
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 48.0 bits (109), Expect = 2e-06
Identities = 28/78 (35%), Positives = 42/78 (53%)
Frame = +1
Query: 73 PIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLERGVEIVIATPGR 252
P + LAP+RELA+QI V E G+ V+ FG P+G ++ +IVI TPG
Sbjct: 185 PQAICLAPSRELARQIMDVVTEMGKYTEVKTA--FGIKDSVPKGAKID--AQIVIGTPGT 240
Query: 253 LLIFWRRRQRTCADALIW 306
++ +RRQ D ++
Sbjct: 241 VMDLMKRRQLDARDIKVF 258
Score = 33.9 bits (74), Expect = 0.031
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Frame = +3
Query: 255 IDFLEKETTNLRRCTYLVLDEADRMLD-MGFEPQIRKIIEQIRPDRQVLMWSATWA 419
+D +++ + R VLDEAD MLD G Q +I + + Q++++SAT++
Sbjct: 242 MDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFS 297
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 46.4 bits (105), Expect = 5e-06
Identities = 29/88 (32%), Positives = 43/88 (48%)
Frame = +1
Query: 16 ILPAIVHIINQPRLLRDDGPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKG 195
I+P + ++ +P+ + VL+L PTRELA Q VA + + GG
Sbjct: 314 IVPILERLLYRPKKVPTTR--VLILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLK 371
Query: 196 PQGRCLERGVEIVIATPGRLLIFWRRRQ 279
Q + L + +IVIATPGR + R Q
Sbjct: 372 LQEQELRKRPDIVIATPGRFIDHMRNSQ 399
Score = 40.3 bits (90), Expect = 4e-04
Identities = 17/37 (45%), Positives = 27/37 (72%)
Frame = +3
Query: 303 LVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSAT 413
+V+DEADRML+ GF ++ +II+ RQ +++SAT
Sbjct: 409 MVMDEADRMLEDGFADELNEIIQACPKSRQTMLFSAT 445
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 46.4 bits (105), Expect = 5e-06
Identities = 27/58 (46%), Positives = 33/58 (56%)
Frame = +1
Query: 82 LVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLERGVEIVIATPGRL 255
LV+APTRELA QI Q S ++R I GG Q R L + +V+ATPGRL
Sbjct: 196 LVVAPTRELAHQICQHFELIKPSPNIRVMSITGGLAVQKQQRLLNKHPHVVVATPGRL 253
Score = 33.1 bits (72), Expect = 0.055
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Frame = +3
Query: 276 TTNLRRCTYLVLDEADRMLDMGFEPQIRKIIE----QIRPDRQVLMWSATW 416
T N ++ LVLDEADR+L ++ K++E + RQ ++SAT+
Sbjct: 263 TGNFKKIKCLVLDEADRLLQKSHFEELSKLLEILGNPMHTQRQTFIFSATF 313
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 46.4 bits (105), Expect = 5e-06
Identities = 24/62 (38%), Positives = 35/62 (56%)
Frame = +1
Query: 70 GPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLERGVEIVIATPG 249
G L+L PTRELA QI + G ++++++ I GG Q L + +V+ATPG
Sbjct: 75 GIFALILTPTRELAIQIDEQFAALGANLNLKHALIVGGMDMIRQSIDLSKRPHVVVATPG 134
Query: 250 RL 255
RL
Sbjct: 135 RL 136
Score = 35.1 bits (77), Expect = 0.014
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +3
Query: 267 EKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQI--RPDRQVLMWSAT 413
E+ LRR +LV+DEADR+L F + + DRQ L+++AT
Sbjct: 145 EETIAGLRRIKFLVMDEADRLLSPTFADDLDDCFSVLPASEDRQTLLFTAT 195
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 42.7 bits (96), Expect = 7e-05
Identities = 24/59 (40%), Positives = 31/59 (52%)
Frame = +1
Query: 82 LVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLERGVEIVIATPGRLL 258
L+L PTRELA Q QV G+ ++V+ GG L V IV+ TPGR+L
Sbjct: 116 LILVPTRELALQTSQVCKTLGKHMNVKVMVTTGGTTLRDDIIRLNDTVHIVVGTPGRVL 174
Score = 42.3 bits (95), Expect = 9e-05
Identities = 18/54 (33%), Positives = 31/54 (57%)
Frame = +3
Query: 255 IDFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATW 416
+D K + CT V+DEAD++L F P I +++ +RQ+ ++SAT+
Sbjct: 174 LDLAGKGVADFSECTTFVMDEADKLLSPEFTPIIEQLLSYFPKNRQISLYSATF 227
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 41.9 bits (94), Expect = 1e-04
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Frame = +1
Query: 82 LVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLERG-VEIVIATPGRL 255
++L+PTRELA QI + A + +R + GG K + + RG ++IATPGRL
Sbjct: 116 VILSPTRELALQIFEEARKLTYGTGIRVSYAIGGNSKMREENAIRRGNANLLIATPGRL 174
Score = 33.1 bits (72), Expect = 0.055
Identities = 17/37 (45%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = +3
Query: 306 VLDEADRMLDMGFEPQIRKIIEQIRPDR-QVLMWSAT 413
+LDEADR++DMGF I I E + + + L +SAT
Sbjct: 193 ILDEADRLMDMGFAESILNIHEAVTTTKTRKLCFSAT 229
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 41.9 bits (94), Expect = 1e-04
Identities = 18/37 (48%), Positives = 26/37 (70%)
Frame = +3
Query: 303 LVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSAT 413
L+LDEADR+LDMGF + I+ + RQ +++SAT
Sbjct: 189 LILDEADRILDMGFRTTLDAIVSSLPVHRQTMLFSAT 225
Score = 35.9 bits (79), Expect = 0.008
Identities = 24/64 (37%), Positives = 33/64 (51%)
Frame = +1
Query: 67 DGPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLERGVEIVIATP 246
DG LV++PTRELA Q + + G+ I GG + L R + I++ TP
Sbjct: 110 DGLGALVISPTRELAIQTFETLVKIGRLHSFSAGLIIGGNNYKEEKERLSR-MNILVCTP 168
Query: 247 GRLL 258
GRLL
Sbjct: 169 GRLL 172
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 40.3 bits (90), Expect = 4e-04
Identities = 17/37 (45%), Positives = 27/37 (72%)
Frame = +3
Query: 303 LVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSAT 413
L+LDEAD ++DMGF+ ++ II Q+ R+ ++SAT
Sbjct: 158 LILDEADTLIDMGFQRTLQSIISQLPKQRRTGLFSAT 194
Score = 28.7 bits (61), Expect = 1.2
Identities = 25/68 (36%), Positives = 30/68 (44%), Gaps = 10/68 (14%)
Frame = +1
Query: 82 LVLAPTRELAQQIQQVANEF---------GQSIHVRNTCIFG-GAPKGPQGRCLERGVEI 231
L++APTRELA QI V E G V + I G G E+ +
Sbjct: 76 LIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGGKGTLTNDLASFREKNPSV 135
Query: 232 VIATPGRL 255
VI TPGRL
Sbjct: 136 VIGTPGRL 143
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 36.7 bits (81), Expect = 0.004
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Frame = +1
Query: 16 ILPAIVHIINQPRLLRDD-GPIVLVLAPTRELAQQIQQVANEFGQ--SIHVRNTCIFGGA 186
++P + ++ Q ++ + G L+L PTRELAQQ+ V + S H+R + +
Sbjct: 69 LIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKLTAFCSKHIRFINVATNS 128
Query: 187 PKGPQGRCLERGVEIVIATPGRLLI 261
Q L +IVIATP R ++
Sbjct: 129 SDTVQRPLLLDLPDIVIATPSRCVV 153
Score = 30.7 bits (66), Expect = 0.29
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +3
Query: 285 LRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSAT 413
L + +LV+DEAD ML G+ ++ + + Q + SAT
Sbjct: 162 LDKLKFLVIDEADLMLSFGYNEDMKTLSRSLPRGTQSFLMSAT 204
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 34.3 bits (75), Expect = 0.024
Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Frame = +1
Query: 67 DGPI-VLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQG----RCLERGVEI 231
DG + VLVL TRELA QI+ F + + T +F G Q + + I
Sbjct: 117 DGEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSKSPHI 176
Query: 232 VIATPGRL 255
V+ATPGRL
Sbjct: 177 VVATPGRL 184
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 33.9 bits (74), Expect = 0.031
Identities = 13/35 (37%), Positives = 24/35 (68%)
Frame = +3
Query: 273 ETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQI 377
E+ +L+ Y+V+DEADR+LD F+ + ++ +I
Sbjct: 279 ESFSLQHLRYMVIDEADRLLDQSFQDWVDTVMMEI 313
>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 767
Score = 33.5 bits (73), Expect = 0.041
Identities = 14/22 (63%), Positives = 18/22 (81%)
Frame = +1
Query: 196 PQGRCLERGVEIVIATPGRLLI 261
P GRCL++G+E VI TP RLL+
Sbjct: 132 PCGRCLKKGLECVIETPPRLLM 153
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 27.1 bits (57), Expect = 3.6
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Frame = +1
Query: 37 IINQPRLLRDDGPIVLVLAPTRELAQQIQQVANE--FGQSIHV 159
I+ + +L G +++APTREL +QI + A + FG S+ +
Sbjct: 104 ILQKLQLHVPGGYRAIIVAPTRELCEQIYRQAEKLSFGTSLKI 146
>SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 332
Score = 26.2 bits (55), Expect = 6.3
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -3
Query: 105 LSCWSQHKDYWTIIS 61
L CWS H DY T++S
Sbjct: 114 LDCWSCHTDYPTVLS 128
>SPAPB24D3.04c |mag1||DNA-3-methyladenine glycosylase
Mag1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 228
Score = 25.8 bits (54), Expect = 8.3
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -3
Query: 222 SPLKTSALWSLWSTTK 175
+P +T+A W LW T+K
Sbjct: 200 APFRTAAAWYLWKTSK 215
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,430,360
Number of Sequences: 5004
Number of extensions: 69190
Number of successful extensions: 214
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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