Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0311
         (893 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       55   8e-10
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               21   2.7  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   3.8  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   8.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   8.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   8.7  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   8.7  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   8.7  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 55.2 bits (127), Expect = 8e-10
 Identities = 30/58 (51%), Positives = 39/58 (67%), Gaps = 4/58 (6%)
 Frame = +3

Query: 255 IDFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKII--EQIRP--DRQVLMWSATW 416
           +DF+EK         +LVLDEADRMLDMGF P I K++  E + P  +RQ LM+SAT+
Sbjct: 335 LDFVEKGRVKFSSVQFLVLDEADRMLDMGFLPSIEKMVDHETMVPLGERQTLMFSATF 392



 Score = 46.0 bits (104), Expect = 5e-07
 Identities = 25/64 (39%), Positives = 36/64 (56%)
 Frame = +1

Query: 73  PIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLERGVEIVIATPGR 252
           P V++++PTREL  QI Q   +F  +  ++    +GG     Q   L  G  I++ATPGR
Sbjct: 274 PQVVIVSPTRELTIQIWQQIVKFSLNSILKTVVAYGGTSVMHQRGKLSAGCHILVATPGR 333

Query: 253 LLIF 264
           LL F
Sbjct: 334 LLDF 337


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 21.0 bits (42), Expect(2) = 2.7
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 264 LEKETTNLRRCTYLVLDEADRML 332
           L++E  NL     L+ DE++RML
Sbjct: 28  LKQENLNLDDIDSLLEDESERML 50



 Score = 20.6 bits (41), Expect(2) = 2.7
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 321 DRMLDMGFEPQIRKIIEQ 374
           D  +DM  +  IRKII Q
Sbjct: 83  DTDMDMDLKDSIRKIIRQ 100


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 561 SSPIPHKHQQSGGCCG 514
           SSP   +HQ+ GGC G
Sbjct: 392 SSPDSARHQRIGGCNG 407


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 7/22 (31%), Positives = 10/22 (45%)
 Frame = -2

Query: 775 LGWRNWFPATKXAXPGWXLVPP 710
           L W +W P+ + A   W    P
Sbjct: 471 LVWNSWMPSIRGAIQQWTCRQP 492


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -2

Query: 373  CSIIFLI*GSKPMSNILSASSSTK*VHRRRFVVSFSKKSIVYQ 245
            C I++     +P++       S     +RRFVV+  + S VYQ
Sbjct: 1527 CPILYFTIQYRPINEFHWTLVSNSVKMQRRFVVTNLQPSSVYQ 1569


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -2

Query: 373  CSIIFLI*GSKPMSNILSASSSTK*VHRRRFVVSFSKKSIVYQ 245
            C I++     +P++       S     +RRFVV+  + S VYQ
Sbjct: 1523 CPILYFTIQYRPINEFHWTLVSNSVKMQRRFVVTNLQPSSVYQ 1565


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 560 LLPFLTNINNLEDVVVGQSSRE 495
           L  FLT ++ + DVV  QS  E
Sbjct: 167 LTAFLTTLDGVNDVVQHQSGSE 188


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -1

Query: 260 INSLPGVAITISTPLSRHLPCGPFGAPPKI 171
           +NS+       +TP +   P GP G P  +
Sbjct: 380 VNSMYASGAQFATPCTPSPPRGPGGVPTSV 409


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 247,880
Number of Sequences: 438
Number of extensions: 5402
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28904421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)