Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0311
(893 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 122 2e-28
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 122 2e-28
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 119 3e-27
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 92 5e-19
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 92 5e-19
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 92 5e-19
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 90 2e-18
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 87 2e-17
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 87 2e-17
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 77 1e-14
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 76 4e-14
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 76 4e-14
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 69 6e-12
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 68 1e-11
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 67 2e-11
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 63 2e-10
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 63 3e-10
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 63 3e-10
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 61 1e-09
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 60 1e-09
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 59 3e-09
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 59 3e-09
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 56 2e-08
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 56 2e-08
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 56 4e-08
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 56 4e-08
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 55 6e-08
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 55 7e-08
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 53 3e-07
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 52 5e-07
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 52 7e-07
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 50 3e-06
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 50 3e-06
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 50 3e-06
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 50 3e-06
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 49 4e-06
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 49 5e-06
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 49 5e-06
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 49 5e-06
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 48 8e-06
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 48 1e-05
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 47 1e-05
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 47 2e-05
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 46 3e-05
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 46 3e-05
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 46 3e-05
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 46 3e-05
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 46 3e-05
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 46 4e-05
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 46 4e-05
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 45 6e-05
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 43 2e-04
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 42 6e-04
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 42 7e-04
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 34 0.11
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 34 0.11
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 34 0.11
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 33 0.19
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 33 0.26
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 31 0.78
At3g07040.1 68416.m00836 disease resistance protein RPM1 (CC-NBS... 31 0.78
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 31 1.4
At4g39340.1 68417.m05569 hypothetical protein 30 2.4
At3g60970.1 68416.m06823 ABC transporter family protein ABC tran... 29 3.1
At3g60160.1 68416.m06717 ABC transporter family protein similar ... 29 3.1
At3g25420.1 68416.m03161 serine carboxypeptidase S10 family prot... 29 3.1
At1g79250.1 68414.m09239 protein kinase, putative similar to vir... 28 9.6
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 122 bits (295), Expect = 2e-28
Identities = 92/244 (37%), Positives = 123/244 (50%)
Frame = +1
Query: 16 ILPAIVHIINQPRLLRDDGPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKG 195
+LPA+VH+ QPRL +DDGPIVL+LAPTRELA QIQ+ + +FG VR+TCI+GGAPKG
Sbjct: 220 LLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKG 279
Query: 196 PQGRCLERGVEIVIATPGRLLIFWRRRQRTCADALIWCWMRLIECWTWAXXXXXXXXXXX 375
PQ R L RGVEIVIATPGR LI Q T + + + +
Sbjct: 280 PQIRDLRRGVEIVIATPGR-LIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVS 338
Query: 376 XXXIDKY*CGQLHXXXXXXXXEVQNLAEEFLHDYIQXNIGSLELWPTTTSSRLLMFVRNG 555
D+ Q EV+ LA +FL D + IGS +L + ++++ V
Sbjct: 339 QIRPDR----QTLLWSATWPREVETLARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTP 394
Query: 556 RRMXN*LHCSLXYLQRGEPKTIIFAENQKXGXTXYVKGDXXVAGWRXLGIPRGGQEXSQX 735
+ N L L L G K +IF E ++ V + GW L I G + S+
Sbjct: 395 EK-YNRLLTLLKQLMDGS-KILIFVETKR--GCDQVTRQLRMDGWPALAI-HGDKTQSER 449
Query: 736 PRXL 747
R L
Sbjct: 450 DRVL 453
Score = 100 bits (239), Expect = 1e-21
Identities = 57/110 (51%), Positives = 70/110 (63%)
Frame = +3
Query: 255 IDFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWAXPPGX 434
ID LE + TNL+R TYLVLDEADRMLDMGFEPQIRKI+ QIRPDRQ L+WSATW P
Sbjct: 300 IDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLLWSATW--PREV 357
Query: 435 XGSXESS*RVPA*LHPXQHWFS*ALANHNILQIVDVCEEWEKNXKLITLL 584
R P + + AN +I Q++++ EK +L+TLL
Sbjct: 358 ETLARQFLRDP---YKAIIGSTDLKANQSINQVIEIVPTPEKYNRLLTLL 404
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 122 bits (295), Expect = 2e-28
Identities = 92/244 (37%), Positives = 123/244 (50%)
Frame = +1
Query: 16 ILPAIVHIINQPRLLRDDGPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKG 195
+LPA+VH+ QPRL +DDGPIVL+LAPTRELA QIQ+ + +FG VR+TCI+GGAPKG
Sbjct: 220 LLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKG 279
Query: 196 PQGRCLERGVEIVIATPGRLLIFWRRRQRTCADALIWCWMRLIECWTWAXXXXXXXXXXX 375
PQ R L RGVEIVIATPGR LI Q T + + + +
Sbjct: 280 PQIRDLRRGVEIVIATPGR-LIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVS 338
Query: 376 XXXIDKY*CGQLHXXXXXXXXEVQNLAEEFLHDYIQXNIGSLELWPTTTSSRLLMFVRNG 555
D+ Q EV+ LA +FL D + IGS +L + ++++ V
Sbjct: 339 QIRPDR----QTLLWSATWPREVETLARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTP 394
Query: 556 RRMXN*LHCSLXYLQRGEPKTIIFAENQKXGXTXYVKGDXXVAGWRXLGIPRGGQEXSQX 735
+ N L L L G K +IF E ++ V + GW L I G + S+
Sbjct: 395 EK-YNRLLTLLKQLMDGS-KILIFVETKR--GCDQVTRQLRMDGWPALAI-HGDKTQSER 449
Query: 736 PRXL 747
R L
Sbjct: 450 DRVL 453
Score = 100 bits (239), Expect = 1e-21
Identities = 57/110 (51%), Positives = 70/110 (63%)
Frame = +3
Query: 255 IDFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWAXPPGX 434
ID LE + TNL+R TYLVLDEADRMLDMGFEPQIRKI+ QIRPDRQ L+WSATW P
Sbjct: 300 IDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLLWSATW--PREV 357
Query: 435 XGSXESS*RVPA*LHPXQHWFS*ALANHNILQIVDVCEEWEKNXKLITLL 584
R P + + AN +I Q++++ EK +L+TLL
Sbjct: 358 ETLARQFLRDP---YKAIIGSTDLKANQSINQVIEIVPTPEKYNRLLTLL 404
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 119 bits (286), Expect = 3e-27
Identities = 56/81 (69%), Positives = 66/81 (81%)
Frame = +1
Query: 16 ILPAIVHIINQPRLLRDDGPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKG 195
+LPAIVH+ QP L DGPIVLVLAPTRELA QIQQ A++FG S ++ TCI+GG PKG
Sbjct: 154 LLPAIVHVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEASKFGSSSKIKTTCIYGGVPKG 213
Query: 196 PQGRCLERGVEIVIATPGRLL 258
PQ R L++GVEIVIATPGRL+
Sbjct: 214 PQVRDLQKGVEIVIATPGRLI 234
Score = 100 bits (240), Expect = 1e-21
Identities = 60/113 (53%), Positives = 67/113 (59%)
Frame = +3
Query: 255 IDFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWAXPPGX 434
ID +E TNLRR TYLVLDEADRMLDMGF+PQIRKI+ IRPDRQ L WSATW P
Sbjct: 234 IDMMESNNTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSHIRPDRQTLYWSATW--PKEV 291
Query: 435 XGSXESS*RVPA*LHPXQHWFS*ALANHNILQIVDVCEEWEKNXKLITLLTXI 593
+ P + S AN I QIVDV E +K KL+ LL I
Sbjct: 292 EQLSKKFLYNP---YKVIIGSSDLKANRAIRQIVDVISESQKYNKLVKLLEDI 341
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 91.9 bits (218), Expect = 5e-19
Identities = 45/82 (54%), Positives = 60/82 (73%), Gaps = 2/82 (2%)
Frame = +1
Query: 16 ILPAIVHIINQPRLLRDD--GPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAP 189
++P +H+ R+ D GP +LVL+PTRELA QIQ+ A +FG+S + TC++GGAP
Sbjct: 213 LIPGFLHL---QRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAP 269
Query: 190 KGPQGRCLERGVEIVIATPGRL 255
KGPQ R LERG +IV+ATPGRL
Sbjct: 270 KGPQLRDLERGADIVVATPGRL 291
Score = 81.4 bits (192), Expect = 7e-16
Identities = 64/177 (36%), Positives = 88/177 (49%)
Frame = +3
Query: 258 DFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWAXPPGXX 437
D LE +LR+ +YLVLDEADRMLDMGFEPQIRKI+++I RQ LM++ATW P G
Sbjct: 293 DILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTATW--PKGVR 350
Query: 438 GSXESS*RVPA*LHPXQHWFS*ALANHNILQIVDVCEEWEKNXKLITLLTXISSEGGTQN 617
PA ++ +AN +I Q ++V EK +L +L S E G++
Sbjct: 351 KIAADLLVNPAQVNIGN--VDELVANKSITQHIEVVAPMEKQRRLEQILR--SQEPGSKV 406
Query: 618 YYIC*KPKGXADXIC*GRXXRXRLAXPRHSTGGTRXQPGXAXFVAGNQFRQPRGPAI 788
C K D + + A + G + QP + NQFR R P +
Sbjct: 407 IIFC-STKRMCDQLTRNLTRQFGAA----AIHGDKSQPERDNVL--NQFRSGRTPVL 456
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 91.9 bits (218), Expect = 5e-19
Identities = 45/82 (54%), Positives = 60/82 (73%), Gaps = 2/82 (2%)
Frame = +1
Query: 16 ILPAIVHIINQPRLLRDD--GPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAP 189
++P +H+ R+ D GP +LVL+PTRELA QIQ+ A +FG+S + TC++GGAP
Sbjct: 213 LIPGFLHL---QRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAP 269
Query: 190 KGPQGRCLERGVEIVIATPGRL 255
KGPQ R LERG +IV+ATPGRL
Sbjct: 270 KGPQLRDLERGADIVVATPGRL 291
Score = 81.4 bits (192), Expect = 7e-16
Identities = 64/177 (36%), Positives = 88/177 (49%)
Frame = +3
Query: 258 DFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWAXPPGXX 437
D LE +LR+ +YLVLDEADRMLDMGFEPQIRKI+++I RQ LM++ATW P G
Sbjct: 293 DILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTATW--PKGVR 350
Query: 438 GSXESS*RVPA*LHPXQHWFS*ALANHNILQIVDVCEEWEKNXKLITLLTXISSEGGTQN 617
PA ++ +AN +I Q ++V EK +L +L S E G++
Sbjct: 351 KIAADLLVNPAQVNIGN--VDELVANKSITQHIEVVAPMEKQRRLEQILR--SQEPGSKV 406
Query: 618 YYIC*KPKGXADXIC*GRXXRXRLAXPRHSTGGTRXQPGXAXFVAGNQFRQPRGPAI 788
C K D + + A + G + QP + NQFR R P +
Sbjct: 407 IIFC-STKRMCDQLTRNLTRQFGAA----AIHGDKSQPERDNVL--NQFRSGRTPVL 456
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 91.9 bits (218), Expect = 5e-19
Identities = 45/82 (54%), Positives = 60/82 (73%), Gaps = 2/82 (2%)
Frame = +1
Query: 16 ILPAIVHIINQPRLLRDD--GPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAP 189
++P +H+ R+ D GP +LVL+PTRELA QIQ+ A +FG+S + TC++GGAP
Sbjct: 213 LIPGFLHL---QRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAP 269
Query: 190 KGPQGRCLERGVEIVIATPGRL 255
KGPQ R LERG +IV+ATPGRL
Sbjct: 270 KGPQLRDLERGADIVVATPGRL 291
Score = 81.4 bits (192), Expect = 7e-16
Identities = 64/177 (36%), Positives = 88/177 (49%)
Frame = +3
Query: 258 DFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWAXPPGXX 437
D LE +LR+ +YLVLDEADRMLDMGFEPQIRKI+++I RQ LM++ATW P G
Sbjct: 293 DILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTATW--PKGVR 350
Query: 438 GSXESS*RVPA*LHPXQHWFS*ALANHNILQIVDVCEEWEKNXKLITLLTXISSEGGTQN 617
PA ++ +AN +I Q ++V EK +L +L S E G++
Sbjct: 351 KIAADLLVNPAQVNIGN--VDELVANKSITQHIEVVAPMEKQRRLEQILR--SQEPGSKV 406
Query: 618 YYIC*KPKGXADXIC*GRXXRXRLAXPRHSTGGTRXQPGXAXFVAGNQFRQPRGPAI 788
C K D + + A + G + QP + NQFR R P +
Sbjct: 407 IIFC-STKRMCDQLTRNLTRQFGAA----AIHGDKSQPERDNVL--NQFRSGRTPVL 456
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 90.2 bits (214), Expect = 2e-18
Identities = 44/80 (55%), Positives = 58/80 (72%)
Frame = +1
Query: 16 ILPAIVHIINQPRLLRDDGPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKG 195
++PA + ++ R +GP VL+LAPTRELA QIQ A FG+S + TC++GGAPKG
Sbjct: 490 LIPAFI-LLRHCRNDSRNGPTVLILAPTRELATQIQDEALRFGRSSRISCTCLYGGAPKG 548
Query: 196 PQGRCLERGVEIVIATPGRL 255
PQ + LERG +IV+ATPGRL
Sbjct: 549 PQLKELERGADIVVATPGRL 568
Score = 75.4 bits (177), Expect = 5e-14
Identities = 49/124 (39%), Positives = 65/124 (52%)
Frame = +3
Query: 258 DFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWAXPPGXX 437
D LE + + ++ + LVLDEADRMLDMGFEPQIRKI+ +I P RQ LM++ATW
Sbjct: 570 DILEMKMIDFQQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKI 629
Query: 438 GSXESS*RVPA*LHPXQHWFS*ALANHNILQIVDVCEEWEKNXKLITLLTXISSEGGTQN 617
S V + AN I Q V+V + EK +L +L S E G++
Sbjct: 630 ASDLLVNPVQVNIGRVDE----LAANKAITQYVEVVPQMEKERRLEQILR--SQERGSKV 683
Query: 618 YYIC 629
C
Sbjct: 684 IIFC 687
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 86.6 bits (205), Expect = 2e-17
Identities = 43/82 (52%), Positives = 59/82 (71%), Gaps = 2/82 (2%)
Frame = +1
Query: 16 ILPAIVHIINQPRLLRDD--GPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAP 189
++P +H+ R+ D GP +LVL+PTRELA QIQ A +FG+S + C++GGAP
Sbjct: 284 LIPGFMHL---QRIHNDSRMGPTILVLSPTRELATQIQVEALKFGKSSKISCACLYGGAP 340
Query: 190 KGPQGRCLERGVEIVIATPGRL 255
KGPQ + +ERGV+IV+ATPGRL
Sbjct: 341 KGPQLKEIERGVDIVVATPGRL 362
Score = 77.0 bits (181), Expect = 2e-14
Identities = 50/125 (40%), Positives = 71/125 (56%), Gaps = 1/125 (0%)
Frame = +3
Query: 258 DFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWAXPPGXX 437
D LE + +L + +YLVLDEADRMLDMGFEPQIRKI+ ++ RQ LM++ATW P
Sbjct: 364 DILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTKRQTLMYTATW---PKEV 420
Query: 438 GSXESS*RV-PA*LHPXQHWFS*ALANHNILQIVDVCEEWEKNXKLITLLTXISSEGGTQ 614
+ V PA ++ +AN +I Q ++V EK+ +L +L S E G++
Sbjct: 421 RKIAADLLVNPAQVNIGN--VDELVANKSITQTIEVLAPMEKHSRLEQILR--SQEPGSK 476
Query: 615 NYYIC 629
C
Sbjct: 477 IIIFC 481
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 86.6 bits (205), Expect = 2e-17
Identities = 41/81 (50%), Positives = 58/81 (71%)
Frame = +1
Query: 16 ILPAIVHIINQPRLLRDDGPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKG 195
+LP IVHI++QP L RD+GPI ++ APTRELA QI A +F ++ +R + ++GG K
Sbjct: 283 VLPMIVHIMDQPELQRDEGPIGVICAPTRELAHQIFLEAKKFSKAYGLRVSAVYGGMSKH 342
Query: 196 PQGRCLERGVEIVIATPGRLL 258
Q + L+ G EIV+ATPGRL+
Sbjct: 343 EQFKELKAGCEIVVATPGRLI 363
Score = 75.8 bits (178), Expect = 4e-14
Identities = 33/53 (62%), Positives = 42/53 (79%)
Frame = +3
Query: 255 IDFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSAT 413
ID L+ + + R +YLVLDEADRM D+GFEPQ+R I+ QIRPDRQ L++SAT
Sbjct: 363 IDMLKMKALTMMRASYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTLLFSAT 415
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 77.4 bits (182), Expect = 1e-14
Identities = 44/102 (43%), Positives = 62/102 (60%)
Frame = +3
Query: 279 TNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWAXPPGXXGSXESS* 458
TNLRR TYLV+DEADRM DMGFEPQI +I++ IRPDRQ +++SAT+ P
Sbjct: 542 TNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATF--PRQVETLARKVL 599
Query: 459 RVPA*LHPXQHWFS*ALANHNILQIVDVCEEWEKNXKLITLL 584
P + ++ N +I Q+V++ E E+ +L+ LL
Sbjct: 600 NKPVEIQVGGR----SVVNKDITQLVEIRPESERFSRLLELL 637
Score = 72.1 bits (169), Expect = 5e-13
Identities = 35/81 (43%), Positives = 52/81 (64%)
Frame = +1
Query: 16 ILPAIVHIINQPRLLRDDGPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKG 195
+LP + HI +QP + DGPI LV+APTREL QQI +F +++ + ++GG+
Sbjct: 451 VLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIYSDIRKFSKALGIICVPVYGGSGVA 510
Query: 196 PQGRCLERGVEIVIATPGRLL 258
Q L+RG EIV+ TPGR++
Sbjct: 511 QQISELKRGTEIVVCTPGRMI 531
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 75.8 bits (178), Expect = 4e-14
Identities = 36/83 (43%), Positives = 54/83 (65%), Gaps = 4/83 (4%)
Frame = +1
Query: 19 LPAIVHIINQPRLL----RDDGPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGA 186
+PAI+H++ + + + + P LVL+PTRELA QI V E G+ +++ C++GG+
Sbjct: 170 IPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQISDVLREAGEPCGLKSICVYGGS 229
Query: 187 PKGPQGRCLERGVEIVIATPGRL 255
KGPQ + GV+IVI TPGRL
Sbjct: 230 SKGPQISAIRSGVDIVIGTPGRL 252
Score = 64.9 bits (151), Expect = 7e-11
Identities = 40/109 (36%), Positives = 59/109 (54%)
Frame = +3
Query: 258 DFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWAXPPGXX 437
D +E L +++VLDEADRMLDMGFE +R I+ RQ++M+SATW P
Sbjct: 254 DLIESNVLRLSDVSFVVLDEADRMLDMGFEEPVRFILSNTNKVRQMVMFSATW---PLDV 310
Query: 438 GSXESS*RVPA*LHPXQHWFS*ALANHNILQIVDVCEEWEKNXKLITLL 584
P + A ANH+++QI++V +E ++ +LI LL
Sbjct: 311 HKLAQEFMDPNPIKVIIGSVDLA-ANHDVMQIIEVLDERARDQRLIALL 358
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 75.8 bits (178), Expect = 4e-14
Identities = 45/109 (41%), Positives = 65/109 (59%)
Frame = +3
Query: 279 TNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWAXPPGXXGSXESS* 458
TNLRR T+LV+DEADRM DMGFEPQI +II+ IRP+RQ +++SAT+ P
Sbjct: 675 TNLRRVTFLVMDEADRMFDMGFEPQITRIIQNIRPERQTVLFSATF--PRQVETLARKVL 732
Query: 459 RVPA*LHPXQHWFS*ALANHNILQIVDVCEEWEKNXKLITLLTXISSEG 605
P + ++ N +I Q+V+V E ++ +L+ LL S +G
Sbjct: 733 NKPVEIQVGGR----SVVNKDITQLVEVRPESDRFLRLLELLGEWSEKG 777
Score = 74.9 bits (176), Expect = 6e-14
Identities = 36/81 (44%), Positives = 52/81 (64%)
Frame = +1
Query: 16 ILPAIVHIINQPRLLRDDGPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKG 195
+LP + HI +QP + DGPI LV+APTREL QQI +F + + +R ++GG+
Sbjct: 584 VLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIHSDIRKFSKPLGIRCVPVYGGSGVA 643
Query: 196 PQGRCLERGVEIVIATPGRLL 258
Q L+RG EIV+ TPGR++
Sbjct: 644 QQISELKRGTEIVVCTPGRMI 664
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 68.5 bits (160), Expect = 6e-12
Identities = 38/90 (42%), Positives = 53/90 (58%), Gaps = 3/90 (3%)
Frame = +1
Query: 16 ILPAIVHIINQPRLLRD---DGPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGA 186
+LP + +I P + + +GP +V+APTRELAQQI++ +F + R T I GG
Sbjct: 368 VLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKFAHYLGFRVTSIVGGQ 427
Query: 187 PKGPQGRCLERGVEIVIATPGRLLIFWRRR 276
QG + +G EIVIATPGRL+ RR
Sbjct: 428 SIEEQGLKITQGCEIVIATPGRLIDCLERR 457
Score = 54.0 bits (124), Expect = 1e-07
Identities = 22/39 (56%), Positives = 30/39 (76%)
Frame = +3
Query: 255 IDFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIE 371
ID LE+ L +C Y+VLDEADRM+DMGFEPQ+ +++
Sbjct: 451 IDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVAGVLD 489
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 67.7 bits (158), Expect = 1e-11
Identities = 34/72 (47%), Positives = 46/72 (63%)
Frame = +1
Query: 40 INQPRLLRDDGPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLER 219
I +PR +R P+ ++L+PTRELA QI A +F V+ +GG P Q R LER
Sbjct: 214 IERPRGVRGVYPLAVILSPTRELACQIHDEARKFSYQTGVKVVVAYGGTPVNQQIRELER 273
Query: 220 GVEIVIATPGRL 255
GV+I++ATPGRL
Sbjct: 274 GVDILVATPGRL 285
Score = 60.5 bits (140), Expect = 1e-09
Identities = 31/57 (54%), Positives = 42/57 (73%), Gaps = 4/57 (7%)
Frame = +3
Query: 258 DFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQI-RPD---RQVLMWSATW 416
D LE+ +L+ +L LDEADRMLDMGFEPQIRKI++Q+ P RQ +++SAT+
Sbjct: 287 DLLERGRVSLQMVRFLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATF 343
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 66.9 bits (156), Expect = 2e-11
Identities = 33/72 (45%), Positives = 45/72 (62%)
Frame = +1
Query: 40 INQPRLLRDDGPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLER 219
+ +PR R P+ ++L+PTRELA QI A +F V+ +GG P Q R LER
Sbjct: 227 VQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFSYQTGVKVVVAYGGTPINQQLRELER 286
Query: 220 GVEIVIATPGRL 255
GV+I++ATPGRL
Sbjct: 287 GVDILVATPGRL 298
Score = 63.7 bits (148), Expect = 2e-10
Identities = 32/57 (56%), Positives = 42/57 (73%), Gaps = 4/57 (7%)
Frame = +3
Query: 258 DFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQI----RPDRQVLMWSATW 416
D LE+ +++ +L LDEADRMLDMGFEPQIRKI+EQ+ R RQ L++SAT+
Sbjct: 300 DLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTLLFSATF 356
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 63.3 bits (147), Expect = 2e-10
Identities = 30/71 (42%), Positives = 45/71 (63%)
Frame = +1
Query: 61 RDDGPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLERGVEIVIA 240
R P+ LVLAPTRELA+Q+++ E S+ C++GG P G Q R L+ GV++ +
Sbjct: 175 RGRNPLCLVLAPTRELARQVEKEFRESAPSLDT--ICLYGGTPIGQQMRQLDYGVDVAVG 232
Query: 241 TPGRLLIFWRR 273
TPGR++ +R
Sbjct: 233 TPGRVIDLMKR 243
Score = 49.2 bits (112), Expect = 4e-06
Identities = 22/53 (41%), Positives = 35/53 (66%)
Frame = +3
Query: 255 IDFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSAT 413
ID +++ NL ++VLDEAD+ML +GF + I+E++ RQ +M+SAT
Sbjct: 238 IDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPEKRQSMMFSAT 290
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 62.9 bits (146), Expect = 3e-10
Identities = 31/57 (54%), Positives = 42/57 (73%), Gaps = 4/57 (7%)
Frame = +3
Query: 258 DFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQI----RPDRQVLMWSATW 416
D LE+ +++ +L LDEADRMLDMGFEPQIRKI+EQ+ R RQ +++SAT+
Sbjct: 292 DLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTMLFSATF 348
Score = 61.7 bits (143), Expect = 6e-10
Identities = 32/72 (44%), Positives = 43/72 (59%)
Frame = +1
Query: 40 INQPRLLRDDGPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLER 219
+ +PR R P ++L+PTRELA QI A +F V+ +GG P Q R LER
Sbjct: 219 VERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQLRELER 278
Query: 220 GVEIVIATPGRL 255
G +I++ATPGRL
Sbjct: 279 GCDILVATPGRL 290
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 62.9 bits (146), Expect = 3e-10
Identities = 31/57 (54%), Positives = 42/57 (73%), Gaps = 4/57 (7%)
Frame = +3
Query: 258 DFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQI----RPDRQVLMWSATW 416
D LE+ +++ +L LDEADRMLDMGFEPQIRKI+EQ+ R RQ +++SAT+
Sbjct: 292 DLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTMLFSATF 348
Score = 61.7 bits (143), Expect = 6e-10
Identities = 32/72 (44%), Positives = 43/72 (59%)
Frame = +1
Query: 40 INQPRLLRDDGPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLER 219
+ +PR R P ++L+PTRELA QI A +F V+ +GG P Q R LER
Sbjct: 219 VERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQLRELER 278
Query: 220 GVEIVIATPGRL 255
G +I++ATPGRL
Sbjct: 279 GCDILVATPGRL 290
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 60.9 bits (141), Expect = 1e-09
Identities = 34/85 (40%), Positives = 52/85 (61%), Gaps = 5/85 (5%)
Frame = +1
Query: 16 ILPAIVHIINQP-RLLRDDG----PIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFG 180
+LP + ++N P + R G P VLVL PTRELA+Q+ + +G S+ + + C++G
Sbjct: 151 VLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELAKQVAADFDAYGGSLGLSSCCLYG 210
Query: 181 GAPKGPQGRCLERGVEIVIATPGRL 255
G Q L+RGV+IV+ TPGR+
Sbjct: 211 GDSYPVQEGKLKRGVDIVVGTPGRI 235
Score = 36.7 bits (81), Expect = 0.021
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = +3
Query: 258 DFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDR--QVLMWSAT 413
D +E++ + + VLDEAD ML MGF + I+ ++ Q L++SAT
Sbjct: 237 DHIERQNLDFSYLQFRVLDEADEMLRMGFVEDVELILGKVEDSTKVQTLLFSAT 290
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 60.5 bits (140), Expect = 1e-09
Identities = 29/71 (40%), Positives = 43/71 (60%)
Frame = +1
Query: 61 RDDGPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLERGVEIVIA 240
R P LVLAPTRELA+Q+++ E S+ C++GG P G Q R L G+++ +
Sbjct: 187 RGKNPQCLVLAPTRELARQVEKEFRESAPSLDT--ICLYGGTPIGQQMRELNYGIDVAVG 244
Query: 241 TPGRLLIFWRR 273
TPGR++ +R
Sbjct: 245 TPGRIIDLMKR 255
Score = 48.0 bits (109), Expect = 8e-06
Identities = 21/53 (39%), Positives = 35/53 (66%)
Frame = +3
Query: 255 IDFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSAT 413
ID +++ NL ++VLDEAD+ML +GF + I++++ RQ +M+SAT
Sbjct: 250 IDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKLPAKRQSMMFSAT 302
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 59.3 bits (137), Expect = 3e-09
Identities = 25/52 (48%), Positives = 36/52 (69%)
Frame = +3
Query: 258 DFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSAT 413
D L K+ +L C YL LDEADR++D+GFE IR++ + + RQ L++SAT
Sbjct: 291 DMLAKKKMSLDACRYLTLDEADRLVDLGFEDDIREVFDHFKSQRQTLLFSAT 342
Score = 50.0 bits (114), Expect = 2e-06
Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 9/89 (10%)
Frame = +1
Query: 16 ILPAIVHIINQPRLL---RDDGPIVLVLAPTRELAQQIQQVANEFGQSI------HVRNT 168
+LP I+ + + ++ +GPI L++ P+RELA+Q +V +F + +R+
Sbjct: 201 VLPMIMIALQEEMMMPIAAGEGPIGLIVCPSRELARQTYEVVEQFVAPLVEAGYPPLRSL 260
Query: 169 CIFGGAPKGPQGRCLERGVEIVIATPGRL 255
GG Q ++RGV IV+ATPGRL
Sbjct: 261 LCIGGIDMRSQLEVVKRGVHIVVATPGRL 289
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 59.3 bits (137), Expect = 3e-09
Identities = 33/73 (45%), Positives = 42/73 (57%)
Frame = +1
Query: 82 LVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLERGVEIVIATPGRLLI 261
LVLAPTRELAQQI++V G + V+ GG R L+ GV +V+ TPGR+
Sbjct: 113 LVLAPTRELAQQIEKVMRALGDYLGVKAQACVGGTSVREDQRVLQSGVHVVVGTPGRVFD 172
Query: 262 FWRRRQRTCADAL 300
RRQ ADA+
Sbjct: 173 L-LRRQSLRADAI 184
Score = 36.7 bits (81), Expect = 0.021
Identities = 20/52 (38%), Positives = 28/52 (53%)
Frame = +3
Query: 258 DFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSAT 413
D L +++ VLDEAD ML GF+ QI I + + QV ++SAT
Sbjct: 172 DLLRRQSLRADAIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVGVFSAT 223
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 56.4 bits (130), Expect = 2e-08
Identities = 24/62 (38%), Positives = 39/62 (62%)
Frame = +1
Query: 73 PIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLERGVEIVIATPGR 252
P+ +VLAPTREL Q++ A G+ + + + GG P Q +++GVE++I TPGR
Sbjct: 187 PLAMVLAPTRELCVQVEDQAKMLGKGLPFKTALVVGGDPMSGQLYRIQQGVELIIGTPGR 246
Query: 253 LL 258
++
Sbjct: 247 VV 248
Score = 40.7 bits (91), Expect = 0.001
Identities = 22/53 (41%), Positives = 29/53 (54%)
Frame = +3
Query: 255 IDFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSAT 413
+D L K T L VLDE D ML GF Q+ +I + + QVL++SAT
Sbjct: 248 VDLLSKHTIELDNIMTFVLDEVDCMLQRGFRDQVMQIFQAL-SQPQVLLFSAT 299
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 56.4 bits (130), Expect = 2e-08
Identities = 24/62 (38%), Positives = 39/62 (62%)
Frame = +1
Query: 73 PIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLERGVEIVIATPGR 252
P+ +VLAPTREL Q++ A G+ + + + GG P Q +++GVE++I TPGR
Sbjct: 50 PLAMVLAPTRELCVQVEDQAKMLGKGLPFKTALVVGGDPMSGQLYRIQQGVELIIGTPGR 109
Query: 253 LL 258
++
Sbjct: 110 VV 111
Score = 40.7 bits (91), Expect = 0.001
Identities = 22/53 (41%), Positives = 29/53 (54%)
Frame = +3
Query: 255 IDFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSAT 413
+D L K T L VLDE D ML GF Q+ +I + + QVL++SAT
Sbjct: 111 VDLLSKHTIELDNIMTFVLDEVDCMLQRGFRDQVMQIFQAL-SQPQVLLFSAT 162
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 55.6 bits (128), Expect = 4e-08
Identities = 26/62 (41%), Positives = 40/62 (64%)
Frame = +1
Query: 73 PIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLERGVEIVIATPGR 252
P LVLAPTRELA+Q+++ E + ++ C++GG Q L RGV++V+ TPGR
Sbjct: 181 PKFLVLAPTRELAKQVEKEIKE--SAPYLSTVCVYGGVSYTIQQSALTRGVDVVVGTPGR 238
Query: 253 LL 258
++
Sbjct: 239 II 240
Score = 51.2 bits (117), Expect = 9e-07
Identities = 24/53 (45%), Positives = 34/53 (64%)
Frame = +3
Query: 255 IDFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSAT 413
ID +E + L YLVLDEAD+ML +GFE + I+E + RQ +++SAT
Sbjct: 240 IDLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENLPTKRQSMLFSAT 292
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 55.6 bits (128), Expect = 4e-08
Identities = 28/65 (43%), Positives = 38/65 (58%)
Frame = +1
Query: 82 LVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLERGVEIVIATPGRLLI 261
LVLAPTRELAQQI++V G + V+ GG R L+ GV +V+ TPGR+
Sbjct: 111 LVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFD 170
Query: 262 FWRRR 276
+R+
Sbjct: 171 MLKRQ 175
Score = 40.7 bits (91), Expect = 0.001
Identities = 21/52 (40%), Positives = 30/52 (57%)
Frame = +3
Query: 258 DFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSAT 413
D L++++ VLDEAD ML GF+ QI I + + P QV ++SAT
Sbjct: 170 DMLKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSAT 221
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 55.2 bits (127), Expect = 6e-08
Identities = 24/52 (46%), Positives = 34/52 (65%)
Frame = +3
Query: 258 DFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSAT 413
D L K+ +L C L LDEADR++D+GFE IR + + + RQ L++SAT
Sbjct: 242 DILAKKKMSLDACRLLTLDEADRLVDLGFEDDIRHVFDHFKSQRQTLLFSAT 293
Score = 52.4 bits (120), Expect = 4e-07
Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 9/89 (10%)
Frame = +1
Query: 16 ILPAIVHIINQPRLL---RDDGPIVLVLAPTRELAQQIQQVANEFGQSI------HVRNT 168
+LP I+ + + ++ +GPI LV+ P+RELA+Q V +F S+ +R+
Sbjct: 152 VLPMIILALQEEIMMPIAAGEGPIALVICPSRELAKQTYDVVEQFVASLVEDGYPRLRSL 211
Query: 169 CIFGGAPKGPQGRCLERGVEIVIATPGRL 255
GG Q +++GV IV+ATPGRL
Sbjct: 212 LCIGGVDMRSQLDVVKKGVHIVVATPGRL 240
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 54.8 bits (126), Expect = 7e-08
Identities = 29/65 (44%), Positives = 37/65 (56%)
Frame = +1
Query: 82 LVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLERGVEIVIATPGRLLI 261
LVLAPTRELAQQI++V G V+ GG R L+ GV +V+ TPGR+
Sbjct: 111 LVLAPTRELAQQIEKVMRALGDYQGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFD 170
Query: 262 FWRRR 276
RR+
Sbjct: 171 MLRRQ 175
Score = 38.3 bits (85), Expect = 0.007
Identities = 21/52 (40%), Positives = 29/52 (55%)
Frame = +3
Query: 258 DFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSAT 413
D L +++ VLDEAD ML GF+ QI I + + P QV ++SAT
Sbjct: 170 DMLRRQSLRPDCIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSAT 221
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 52.8 bits (121), Expect = 3e-07
Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Frame = +1
Query: 16 ILPAIVHII-NQPRLLRDDGPIVLVLAPTRELAQQIQQVANEFGQSIH-VRNTCIFGGAP 189
+ P I H+ + P++ R G LV+ PTREL Q+ + + H + + GG
Sbjct: 85 LAPLIHHLQGHSPKVDRSHGTFALVIVPTRELCLQVYETLEKLLHRFHWIVPGYVMGGEK 144
Query: 190 KGPQGRCLERGVEIVIATPGRLL 258
K + L +G+ I+IATPGRLL
Sbjct: 145 KAKEKARLRKGISILIATPGRLL 167
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 52.0 bits (119), Expect = 5e-07
Identities = 23/62 (37%), Positives = 36/62 (58%)
Frame = +1
Query: 73 PIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLERGVEIVIATPGR 252
P +VL PTREL++Q+ +VA R+ + GG+ PQ L +++V+ TPGR
Sbjct: 190 PRTVVLCPTRELSEQVYRVAKSISHHARFRSILVSGGSRIRPQEDSLNNAIDMVVGTPGR 249
Query: 253 LL 258
+L
Sbjct: 250 IL 251
Score = 37.9 bits (84), Expect = 0.009
Identities = 16/23 (69%), Positives = 18/23 (78%)
Frame = +3
Query: 300 YLVLDEADRMLDMGFEPQIRKII 368
YLVLDEAD M D GF P+IRK +
Sbjct: 266 YLVLDEADTMFDRGFGPEIRKFL 288
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 51.6 bits (118), Expect = 7e-07
Identities = 22/54 (40%), Positives = 37/54 (68%)
Frame = +3
Query: 255 IDFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATW 416
+D +K L+ C LV+DEAD++L + F+P I ++I+ + RQ+LM+SAT+
Sbjct: 284 LDLAKKGVCVLKDCAMLVMDEADKLLSVEFQPSIEELIQFLPESRQILMFSATF 337
Score = 39.1 bits (87), Expect = 0.004
Identities = 20/59 (33%), Positives = 30/59 (50%)
Frame = +1
Query: 82 LVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLERGVEIVIATPGRLL 258
++L PTRELA Q QV E + + + GG L + V +++ TPGR+L
Sbjct: 226 VILVPTRELALQTSQVCKELSKYLKIEVMVTTGGTSLRDDIMRLYQPVHLLVGTPGRIL 284
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 49.6 bits (113), Expect = 3e-06
Identities = 21/54 (38%), Positives = 35/54 (64%)
Frame = +3
Query: 255 IDFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATW 416
+D +K L+ C+ LV+DEAD++L F+P + +I + RQ+LM+SAT+
Sbjct: 261 LDLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLPESRQILMFSATF 314
Score = 41.5 bits (93), Expect = 7e-04
Identities = 20/59 (33%), Positives = 32/59 (54%)
Frame = +1
Query: 82 LVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLERGVEIVIATPGRLL 258
+++ PTRELA Q QV E G+ + ++ GG L + V +++ TPGR+L
Sbjct: 203 VIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRIL 261
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 49.6 bits (113), Expect = 3e-06
Identities = 21/54 (38%), Positives = 35/54 (64%)
Frame = +3
Query: 255 IDFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATW 416
+D +K L+ C+ LV+DEAD++L F+P + +I + RQ+LM+SAT+
Sbjct: 261 LDLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLPESRQILMFSATF 314
Score = 41.5 bits (93), Expect = 7e-04
Identities = 20/59 (33%), Positives = 32/59 (54%)
Frame = +1
Query: 82 LVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLERGVEIVIATPGRLL 258
+++ PTRELA Q QV E G+ + ++ GG L + V +++ TPGR+L
Sbjct: 203 VIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRIL 261
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 49.6 bits (113), Expect = 3e-06
Identities = 29/75 (38%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Frame = +1
Query: 82 LVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLERGVEIVIATPGRLLI 261
L+L+PTRELA Q ++ G +++ GG G R LE GV +V TPGR+
Sbjct: 107 LILSPTRELATQTEKTIQAIGLHANIQAHACIGGNSVGEDIRKLEHGVHVVSGTPGRVCD 166
Query: 262 FWRRRQ-RTCADALI 303
+RR RT A L+
Sbjct: 167 MIKRRSLRTRAIKLL 181
Score = 43.6 bits (98), Expect = 2e-04
Identities = 20/52 (38%), Positives = 30/52 (57%)
Frame = +3
Query: 258 DFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSAT 413
D +++ + R L+LDE+D ML GF+ QI + + PD QV + SAT
Sbjct: 166 DMIKRRSLRTRAIKLLILDESDEMLSRGFKDQIYDVYRYLPPDLQVCLVSAT 217
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 49.6 bits (113), Expect = 3e-06
Identities = 24/63 (38%), Positives = 38/63 (60%)
Frame = +1
Query: 70 GPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLERGVEIVIATPG 249
G L+L+PTR+LA+Q + E G+ +R + + GG Q L +G +++IATPG
Sbjct: 98 GVRALILSPTRDLAEQTLKFTKELGKFTDLRVSLLVGGDSMEDQFEELTKGPDVIIATPG 157
Query: 250 RLL 258
RL+
Sbjct: 158 RLM 160
Score = 46.8 bits (106), Expect = 2e-05
Identities = 21/49 (42%), Positives = 31/49 (63%)
Frame = +3
Query: 267 EKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSAT 413
E + LR Y+V DEAD + MGF Q+ +I+ Q+ +RQ L++SAT
Sbjct: 165 EVDDMTLRTVEYVVFDEADSLFGMGFAEQLHQILTQLSENRQTLLFSAT 213
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 49.2 bits (112), Expect = 4e-06
Identities = 29/81 (35%), Positives = 46/81 (56%)
Frame = +1
Query: 16 ILPAIVHIINQPRLLRDDGPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKG 195
++PA V ++ + R +G V+V+ PTRELA Q + VA E + + + GG +
Sbjct: 144 LIPA-VELLFKERFSPRNGTGVIVICPTRELAIQTKNVAEELLKHHSQTVSMVIGGNNRR 202
Query: 196 PQGRCLERGVEIVIATPGRLL 258
+ + + G +VIATPGRLL
Sbjct: 203 SEAQRIASGSNLVIATPGRLL 223
Score = 37.9 bits (84), Expect = 0.009
Identities = 17/37 (45%), Positives = 26/37 (70%)
Frame = +3
Query: 303 LVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSAT 413
LV+DEADR+L+ FE + KI++ + RQ ++SAT
Sbjct: 240 LVIDEADRILEENFEEDMNKILKILPKTRQTALFSAT 276
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 48.8 bits (111), Expect = 5e-06
Identities = 29/81 (35%), Positives = 45/81 (55%)
Frame = +1
Query: 16 ILPAIVHIINQPRLLRDDGPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKG 195
++PA V ++ + + +G VLV+ PTRELA Q VA E + + GG +
Sbjct: 209 LIPA-VELLYRVKFTPRNGTGVLVICPTRELAIQSYGVAKELLKYHSQTVGKVIGGEKRK 267
Query: 196 PQGRCLERGVEIVIATPGRLL 258
+ L +GV +++ATPGRLL
Sbjct: 268 TEAEILAKGVNLLVATPGRLL 288
Score = 41.1 bits (92), Expect = 0.001
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Frame = +3
Query: 273 ETTN---LRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSAT 413
E TN + +LV+DEADR+L+ FE ++KI+ + RQ ++SAT
Sbjct: 292 ENTNGFIFKNLKFLVMDEADRILEQNFEEDLKKILNLLPKTRQTSLFSAT 341
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 48.8 bits (111), Expect = 5e-06
Identities = 21/54 (38%), Positives = 36/54 (66%)
Frame = +3
Query: 255 IDFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATW 416
+D +K L+ C LV+DEAD++L F+P + ++I+ + +RQ LM+SAT+
Sbjct: 254 LDLTKKGVCVLKDCAMLVMDEADKLLSAEFQPSLEELIQFLPQNRQFLMFSATF 307
Score = 41.5 bits (93), Expect = 7e-04
Identities = 20/59 (33%), Positives = 32/59 (54%)
Frame = +1
Query: 82 LVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLERGVEIVIATPGRLL 258
++L PTRELA Q QV E + ++++ GG L + V +++ TPGR+L
Sbjct: 196 MILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLHQPVHLLVGTPGRIL 254
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 48.8 bits (111), Expect = 5e-06
Identities = 21/54 (38%), Positives = 36/54 (66%)
Frame = +3
Query: 255 IDFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATW 416
+D +K L+ C LV+DEAD++L F+P + ++I+ + +RQ LM+SAT+
Sbjct: 254 LDLTKKGVCVLKDCAMLVMDEADKLLSAEFQPSLEELIQFLPQNRQFLMFSATF 307
Score = 41.5 bits (93), Expect = 7e-04
Identities = 20/59 (33%), Positives = 32/59 (54%)
Frame = +1
Query: 82 LVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLERGVEIVIATPGRLL 258
++L PTRELA Q QV E + ++++ GG L + V +++ TPGR+L
Sbjct: 196 MILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLHQPVHLLVGTPGRIL 254
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 48.0 bits (109), Expect = 8e-06
Identities = 21/41 (51%), Positives = 31/41 (75%)
Frame = +3
Query: 291 RCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSAT 413
R +LVLDEADR+LD+GF+ ++R I + + RQ L++SAT
Sbjct: 203 RTKFLVLDEADRVLDVGFQDELRTIFQCLPKSRQTLLFSAT 243
Score = 44.0 bits (99), Expect = 1e-04
Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Frame = +1
Query: 52 RLLRDD-GPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLERGVE 228
RL D G LV+ PTRELA Q+ + G +++R + I GG Q L
Sbjct: 119 RLAEDPYGVFALVVTPTRELAFQLAEQFKALGSCLNLRCSVIVGGMDMLTQTMSLVSRPH 178
Query: 229 IVIATPGRLLI 261
IVI TPGR+ +
Sbjct: 179 IVITTPGRIKV 189
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 47.6 bits (108), Expect = 1e-05
Identities = 22/45 (48%), Positives = 29/45 (64%)
Frame = +3
Query: 279 TNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSAT 413
T L+ LVLDEAD +LDMGF I +II + +RQ ++SAT
Sbjct: 205 TRLKGVKVLVLDEADHLLDMGFRKDIERIISAVPKERQTFLFSAT 249
Score = 41.1 bits (92), Expect = 0.001
Identities = 33/87 (37%), Positives = 47/87 (54%), Gaps = 7/87 (8%)
Frame = +1
Query: 16 ILPAIVHIINQPRLLRDDG--PIV-LVLAPTRELAQQIQQVAN---EFGQSIHVRNTCIF 177
+LP+I ++ P D+ PI+ LV+ PTRELA Q AN ++ SI V+ +
Sbjct: 109 LLPSIEVVVKSPPTSPDNKRPPILALVICPTRELANQAATEANTLLKYHPSIGVQ--VVI 166
Query: 178 GGAPKG-PQGRCLERGVEIVIATPGRL 255
GG G Q R +I++ATPGRL
Sbjct: 167 GGTRLGLEQKRMQTNPCQILVATPGRL 193
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 47.2 bits (107), Expect = 1e-05
Identities = 24/59 (40%), Positives = 33/59 (55%)
Frame = +1
Query: 79 VLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLERGVEIVIATPGRL 255
VLVL+P+RELA Q ++ G +++ GG G + LERGV V TPGR+
Sbjct: 93 VLVLSPSRELASQTEKTIQAIGAHTNIQAHACIGGKSIGEDIKKLERGVHAVSGTPGRV 151
Score = 35.5 bits (78), Expect = 0.048
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = +3
Query: 258 DFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSAT 413
D +++ + + LVLDE+D ML G + QI + + D QV + SAT
Sbjct: 153 DMIKRGSLQTKAVKLLVLDESDEMLSKGLKDQIYDVYRALPHDIQVCLISAT 204
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 46.8 bits (106), Expect = 2e-05
Identities = 31/94 (32%), Positives = 44/94 (46%)
Frame = +1
Query: 19 LPAIVHIINQPRLLRDDGPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGP 198
LP + ++ +P+ R VL+L PTRELA QI + Q ++ I GG
Sbjct: 223 LPTLERLLFRPK--RVFATRVLILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGGLSVRE 280
Query: 199 QGRCLERGVEIVIATPGRLLIFWRRRQRTCADAL 300
Q L +IV+ATPGR++ R D L
Sbjct: 281 QEVVLRSMPDIVVATPGRMIDHLRNSMSVDLDDL 314
Score = 38.3 bits (85), Expect = 0.007
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = +3
Query: 255 IDFLEKE-TTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSAT 413
ID L + +L L+LDEADR+L GF +I +++ RQ +++SAT
Sbjct: 300 IDHLRNSMSVDLDDLAVLILDEADRLLQTGFATEITELVRLCPKRRQTMLFSAT 353
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 46.0 bits (104), Expect = 3e-05
Identities = 24/53 (45%), Positives = 30/53 (56%)
Frame = +3
Query: 255 IDFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSAT 413
ID T L LVLDEAD +LDMGF +I +II + RQ ++SAT
Sbjct: 223 IDNTSGFATRLMGVKVLVLDEADHLLDMGFRREIERIIAAVPKQRQTFLFSAT 275
Score = 44.4 bits (100), Expect = 1e-04
Identities = 34/87 (39%), Positives = 49/87 (56%), Gaps = 7/87 (8%)
Frame = +1
Query: 16 ILPAIVHIINQPRLLRDDGP---IVLVLAPTRELAQQIQQVAN---EFGQSIHVRNTCIF 177
+LP+I +I P RD+ IVLV+ PTRELA Q AN ++ SI V+ +
Sbjct: 135 LLPSIEAVIKAPPASRDNRHPPIIVLVVCPTRELACQAAAEANILLKYHPSIGVQ--VVI 192
Query: 178 GGAPKGPQGRCLERG-VEIVIATPGRL 255
GG + R L++ +I++ATPGRL
Sbjct: 193 GGTKLPTEQRRLQKSPCQILVATPGRL 219
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 46.0 bits (104), Expect = 3e-05
Identities = 22/53 (41%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Frame = +3
Query: 258 DFLEK-ETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSAT 413
D +E+ E + R L+LDEADR+L+MGF+ Q+ II ++ R+ ++SAT
Sbjct: 155 DIMERMEILDFRNLEILILDEADRLLEMGFQRQVNYIISRLPKQRRTGLFSAT 207
Score = 39.5 bits (88), Expect = 0.003
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Frame = +1
Query: 82 LVLAPTRELAQQIQQVANEFGQSI-HVRNTCIFGGAP-KGPQGRCLERGVEIVIATPGRL 255
++++PTREL+ QI VA F ++ +V + + GG K E G ++I TPGRL
Sbjct: 94 VIISPTRELSTQIYNVAQPFVSTLANVNSVLLVGGREVKADMKIIEEEGCNVLIGTPGRL 153
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 46.0 bits (104), Expect = 3e-05
Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Frame = +1
Query: 73 PIVLVLAPTRELAQQIQQVANEFGQS-IHVRNTCIFGGAPKGPQGRCLERGVEIVIATPG 249
P V+VL PT ELA Q+ +S + R+ + GG + Q LE+GV+++IATPG
Sbjct: 452 PRVIVLVPTAELASQVLANCRSISKSGVPFRSMVVTGGFRQRTQLENLEQGVDVLIATPG 511
Query: 250 R 252
R
Sbjct: 512 R 512
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 46.0 bits (104), Expect = 3e-05
Identities = 21/47 (44%), Positives = 31/47 (65%)
Frame = +3
Query: 273 ETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSAT 413
E + R L+LDEADR+LDMGF+ Q+ II ++ R+ ++SAT
Sbjct: 161 EFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQRRTGLFSAT 207
Score = 41.1 bits (92), Expect = 0.001
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Frame = +1
Query: 82 LVLAPTRELAQQIQQVANEFGQSI-HVRNTCIFGGAP-KGPQGRCLERGVEIVIATPGRL 255
++++PTREL+ QI +VA F ++ +V + + GG + E G ++I TPGRL
Sbjct: 94 VIISPTRELSAQIHKVAEPFVSTLPNVNSVLLVGGREVEADMNTLEEEGANLLIGTPGRL 153
Query: 256 LIFWRRRQ 279
+R +
Sbjct: 154 SDMMKRME 161
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 46.0 bits (104), Expect = 3e-05
Identities = 21/47 (44%), Positives = 31/47 (65%)
Frame = +3
Query: 273 ETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSAT 413
E + R L+LDEADR+LDMGF+ Q+ II ++ R+ ++SAT
Sbjct: 154 EFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQRRTGLFSAT 200
Score = 29.1 bits (62), Expect = 4.2
Identities = 20/66 (30%), Positives = 31/66 (46%)
Frame = +1
Query: 82 LVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLERGVEIVIATPGRLLI 261
++++PTREL+ QI +VA VR + E G ++I TPGRL
Sbjct: 95 VIISPTRELSAQIHKVARA------VRLDFAKCREVEADMNTLEEEGANLLIGTPGRLSD 148
Query: 262 FWRRRQ 279
+R +
Sbjct: 149 MMKRME 154
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 45.6 bits (103), Expect = 4e-05
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Frame = +1
Query: 16 ILPAIVHII--NQPRLLRDDGP--IVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGG 183
IL A++ + ++P+ R P VL+PTRELA QI + G I +R + GG
Sbjct: 67 ILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADISLRCAVLVGG 126
Query: 184 APKGPQGRCLERGVEIVIATPGRL 255
+ Q L + +++ATPGRL
Sbjct: 127 IDRMQQTIALGKRPHVIVATPGRL 150
Score = 45.2 bits (102), Expect = 6e-05
Identities = 20/44 (45%), Positives = 32/44 (72%)
Frame = +3
Query: 282 NLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSAT 413
+L+ YLVLDEADR+L+ FE + +I+E+I +R+ ++SAT
Sbjct: 161 SLKSLKYLVLDEADRLLNEDFEKSLNQILEEIPLERKTFLFSAT 204
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 45.6 bits (103), Expect = 4e-05
Identities = 24/58 (41%), Positives = 34/58 (58%)
Frame = +1
Query: 82 LVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLERGVEIVIATPGRL 255
L++ PTRELA Q+ + +++ V+ I GG Q R L+ EIV+ATPGRL
Sbjct: 283 LIITPTRELALQVTEHLENAAKNLSVKVVPIVGGMFSEKQERRLKEKPEIVVATPGRL 340
Score = 32.3 bits (70), Expect = 0.45
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +3
Query: 246 W*TIDFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIE 371
W + EK L ++ VLDEADRM++ G +++ I++
Sbjct: 341 WELMSAGEKHLVELHSLSFFVLDEADRMVERGHFRELQSILD 382
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 45.2 bits (102), Expect = 6e-05
Identities = 34/87 (39%), Positives = 47/87 (54%), Gaps = 7/87 (8%)
Frame = +1
Query: 16 ILPAIVHIINQPRLLRDDGP---IVLVLAPTRELAQQIQQVAN---EFGQSIHVRNTCIF 177
+LPAI +I P RD IVLV+ PTRELA Q AN ++ SI V+ +
Sbjct: 437 LLPAIEAVIKSPPASRDSRQPPIIVLVVCPTRELASQAAAEANTLLKYHPSIGVQ--VVI 494
Query: 178 GGAPKGPQGRCLERG-VEIVIATPGRL 255
GG + R ++ +I++ATPGRL
Sbjct: 495 GGTKLPTEQRRMQTNPCQILVATPGRL 521
Score = 44.8 bits (101), Expect = 8e-05
Identities = 22/45 (48%), Positives = 27/45 (60%)
Frame = +3
Query: 279 TNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSAT 413
T L LVLDEAD +LDMGF I +II + RQ ++SAT
Sbjct: 533 TRLMGVKVLVLDEADHLLDMGFRRDIERIIAAVPKQRQTFLFSAT 577
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/37 (54%), Positives = 27/37 (72%)
Frame = +3
Query: 303 LVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSAT 413
L+LDEADR+LD F+ Q+ II Q+ RQ L++SAT
Sbjct: 222 LILDEADRVLDSAFKGQLDPIISQLPKHRQTLLFSAT 258
Score = 36.3 bits (80), Expect = 0.027
Identities = 23/81 (28%), Positives = 41/81 (50%)
Frame = +1
Query: 16 ILPAIVHIINQPRLLRDDGPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKG 195
++P I+ +++ R +DG ++++PTRELA Q V N+ G+ + GG
Sbjct: 126 VIP-ILEKLHRERWSPEDGVGCIIISPTRELAAQTFGVLNKVGKFHKFSAGLLIGGREGV 184
Query: 196 PQGRCLERGVEIVIATPGRLL 258
+ + I++ PGRLL
Sbjct: 185 DVEKERVHEMNILVCAPGRLL 205
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 41.9 bits (94), Expect = 6e-04
Identities = 19/46 (41%), Positives = 30/46 (65%)
Frame = +3
Query: 276 TTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSAT 413
T+ L ++DEAD +LD+GF+ + KII+ + RQ L++SAT
Sbjct: 526 TSRLMALKLFIVDEADLLLDLGFKRDVEKIIDCLPRQRQSLLFSAT 571
Score = 37.1 bits (82), Expect = 0.016
Identities = 34/88 (38%), Positives = 44/88 (50%), Gaps = 7/88 (7%)
Frame = +1
Query: 16 ILPAIVHII---NQPRLLRDDGPI-VLVLAPTRELAQQIQQVANEF---GQSIHVRNTCI 174
+LPAI ++ N + + PI VL+L PTRELA QI I V+ T I
Sbjct: 430 LLPAIETVLKAMNSGKGVHKVAPIFVLILCPTRELASQIAAEGKALLKNHDGIGVQ-TLI 488
Query: 175 FGGAPKGPQGRCLERGVEIVIATPGRLL 258
G + Q R +I+IATPGRLL
Sbjct: 489 GGTRFRLDQQRLESEPCQILIATPGRLL 516
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 41.5 bits (93), Expect = 7e-04
Identities = 19/46 (41%), Positives = 29/46 (63%)
Frame = +3
Query: 276 TTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSAT 413
T+ L ++DEAD +LD+GF + KII+ + RQ L++SAT
Sbjct: 479 TSRLMALKLFIVDEADLLLDLGFRRDVEKIIDCLPRQRQSLLFSAT 524
Score = 39.9 bits (89), Expect = 0.002
Identities = 35/88 (39%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Frame = +1
Query: 16 ILPAIVHII---NQPRLLRDDGPI-VLVLAPTRELAQQIQQVAN---EFGQSIHVRNTCI 174
+LPAI ++ N + + PI L+L PTRELA QI +F I V+ T I
Sbjct: 383 LLPAIETVLKAMNSGKGVNKVAPIFALILCPTRELASQIAAEGKALLKFHDGIGVQ-TLI 441
Query: 175 FGGAPKGPQGRCLERGVEIVIATPGRLL 258
G K Q R +I+IATPGRLL
Sbjct: 442 GGTRFKLDQQRLESEPCQILIATPGRLL 469
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 34.3 bits (75), Expect = 0.11
Identities = 15/45 (33%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Frame = +3
Query: 282 NLRRCTYLVLDEADRMLD-MGFEPQIRKIIEQIRPDRQVLMWSAT 413
+L+ + +LDE D+ML+ + +++I + D+QV+M+SAT
Sbjct: 187 SLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 231
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 34.3 bits (75), Expect = 0.11
Identities = 15/45 (33%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Frame = +3
Query: 282 NLRRCTYLVLDEADRMLD-MGFEPQIRKIIEQIRPDRQVLMWSAT 413
+L+ + +LDE D+ML+ + +++I + D+QV+M+SAT
Sbjct: 104 SLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 148
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 34.3 bits (75), Expect = 0.11
Identities = 15/45 (33%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Frame = +3
Query: 282 NLRRCTYLVLDEADRMLD-MGFEPQIRKIIEQIRPDRQVLMWSAT 413
+L+ + +LDE D+ML+ + +++I + D+QV+M+SAT
Sbjct: 187 SLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 231
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 33.5 bits (73), Expect = 0.19
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Frame = +1
Query: 82 LVLAPTRELAQQIQQVANEFGQSIHVRNT-CIFGGAPKGPQGRCLERG-VEIVIATPGRL 255
+++AP+REL QI + + +H R + GGA + Q L++ IV+ TPGR+
Sbjct: 195 MIVAPSRELGMQIVREVEKLLGPVHRRMVQQLVGGANRMRQEEALKKNKPAIVVGTPGRI 254
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 33.1 bits (72), Expect = 0.26
Identities = 17/37 (45%), Positives = 22/37 (59%)
Frame = +3
Query: 303 LVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSAT 413
LVLDEAD +L G+E +R + I Q L+ SAT
Sbjct: 204 LVLDEADLLLSYGYEDNLRSVTSIIPRRCQCLLMSAT 240
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 31.5 bits (68), Expect = 0.78
Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Frame = +3
Query: 285 LRRCTYLVLDEADRMLDM-GFEP---QIRKIIEQIRPDRQVLMWSATW 416
L LV DEAD ML GF +I K I ++ P+ QVL++SAT+
Sbjct: 236 LNHLKILVFDEADHMLATDGFRDDSLKIMKDIGRVNPNFQVLLFSATF 283
Score = 29.9 bits (64), Expect = 2.4
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Frame = +1
Query: 73 PIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQG--RCLERGVEIVIATP 246
P L + PTRELA Q +V + G+ + + +G R +VI TP
Sbjct: 163 PQALCICPTRELANQNMEVLQKMGKFTGITAELAVPDSTRGAPAATRGAPVSAHVVIGTP 222
Query: 247 GRL 255
G L
Sbjct: 223 GTL 225
>At3g07040.1 68416.m00836 disease resistance protein RPM1
(CC-NBS-LRR class), putative domain signature CC-NBS-LRR
exists, suggestive of a disease resistance protein.
Identical to RPM1 (gi:1361985)
Length = 926
Score = 31.5 bits (68), Expect = 0.78
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +1
Query: 88 LAPTRELAQQIQQVANEFGQSIHVRNTC 171
+A TR+LA QI+ + +EFG IH +C
Sbjct: 68 VANTRDLAYQIEDILDEFGYHIHGYRSC 95
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +3
Query: 285 LRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQ 392
LR Y+V DEAD +L F+ QI ++I +R D +
Sbjct: 235 LRCVKYVVFDEADMLLCGSFQNQIIRLINMLRFDEK 270
>At4g39340.1 68417.m05569 hypothetical protein
Length = 127
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -3
Query: 786 WPAPLVGGIGFQPQXSRXLAGFLSPPWNAEGTPA 685
WPA L +GF P+ + L GF P + + +PA
Sbjct: 89 WPAMLTS-LGFTPEEANVLRGFCQNPNSGDSSPA 121
>At3g60970.1 68416.m06823 ABC transporter family protein ABC
transporter-like proteins
Length = 1037
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +3
Query: 285 LRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVL 398
L++ LVLDEA +D + I+KII Q DR V+
Sbjct: 938 LKKSNILVLDEATASVDSATDGVIQKIINQEFKDRTVV 975
>At3g60160.1 68416.m06717 ABC transporter family protein similar to
ATP-binding cassette transporter MRP8 GI:18031899 from
[Arabidopsis thaliana]
Length = 1490
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +3
Query: 285 LRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVL 398
L++ LVLDEA +D + I+KII Q DR V+
Sbjct: 1391 LKKSNILVLDEATASVDSATDGVIQKIINQEFKDRTVV 1428
>At3g25420.1 68416.m03161 serine carboxypeptidase S10 family protein
similar to serine carboxypeptidase I precursor
(SP:P37890) from [Oryza sativa]
Length = 505
Score = 29.5 bits (63), Expect = 3.1
Identities = 17/51 (33%), Positives = 20/51 (39%)
Frame = -3
Query: 864 FXPKXFKXFPXXXPPWAGKXRLANXKWPAPLVGGIGFQPQXSRXLAGFLSP 712
F PK P A + R+ WP V G P S+ LAGF P
Sbjct: 299 FLPKSLLTLGKTEKPMAVRKRMFGRAWPLGAVVRPGIVPSWSQLLAGFGVP 349
>At1g79250.1 68414.m09239 protein kinase, putative similar to viroid
symptom modulation protein/dual-specificity protein
kinase [Lycopersicon esculentum] gi|7672777|gb|AAF66637
Length = 555
Score = 27.9 bits (59), Expect = 9.6
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = -3
Query: 324 YQPHPAPNKCIGAGSLSPSPKNQ*STRSSNNNFHSPLKTSALW-SLWSTTKDTSVPH 157
++P+P+P GS ++ +T+ +NNN ++ S+ S+ ST+ + S PH
Sbjct: 65 HRPNPSPKIPSSPGSNMTESQSNLNTKPNNNNSNNNSNMSSRSNSIESTSSNPSKPH 121
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,908,621
Number of Sequences: 28952
Number of extensions: 411192
Number of successful extensions: 1118
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1094
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2100696768
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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