Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0301
         (749 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        27   0.12 
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    24   1.5  
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    23   2.0  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   4.6  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   4.6  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    22   4.6  

>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 27.5 bits (58), Expect = 0.12
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -2

Query: 214 QSSLCRAAPRYHCLERSYPVE 152
           Q+++C  APRYH L+ + PV+
Sbjct: 300 QTAICFKAPRYHTLDITEPVK 320


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +3

Query: 255 NSHTTTPNGRRLDALVDNLAFDI-VAPLI 338
           N H   PNG  + +L+D +++    APLI
Sbjct: 513 NRHLVAPNGDHVISLIDEISYMAPPAPLI 541


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 16/61 (26%), Positives = 29/61 (47%)
 Frame = +3

Query: 327 APLIPTHYPLNIAHRPDILDIALLKNVTLXGPFFLKTLDRSSFRVRFRPTVPSLXSSVAL 506
           A ++P   PL +  +   ++  L  +  +  PFF + LD  +FRV     + S  S+ + 
Sbjct: 233 ASMLPKPTPL-VPQQGFNMERLLAPSTEVSAPFFRQPLDLYNFRVPQHQVLQSPSSTSSS 291

Query: 507 P 509
           P
Sbjct: 292 P 292


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 11  VVVVPSFTIEEPCIASRSILPRSLISK 91
           + +V  FTI EP +     LP+ L  K
Sbjct: 275 IAIVAPFTIVEPKLNKHEDLPQDLSMK 301


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 11  VVVVPSFTIEEPCIASRSILPRSLISK 91
           + +V  FTI EP +     LP+ L  K
Sbjct: 167 IAIVAPFTIVEPKLNKHEDLPQDLSMK 193


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 531 VPRDGNGXGARPSXITTGR 475
           VP+ G    ARP  +TT R
Sbjct: 36  VPQGGRRRAARPGVVTTPR 54


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,867
Number of Sequences: 336
Number of extensions: 2512
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20027417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)