Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0301
(749 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M38643-2|AAA28940.1| 192|Drosophila melanogaster protein ( D.me... 48 1e-05
M22874-2|AAA28675.1| 916|Drosophila melanogaster protein ( D.me... 48 1e-05
M17214-2|AAA28508.1| 858|Drosophila melanogaster protein ( D.me... 39 0.006
AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein. 39 0.008
AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p pro... 33 0.31
X17551-2|CAA35587.1| 888|Drosophila melanogaster protein ( D.me... 32 0.96
X03431-2|CAB57796.1| 1059|Drosophila melanogaster protein ( Dros... 31 2.2
AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein ... 31 2.2
AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein ... 31 2.2
AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein ... 31 2.2
AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p pro... 29 6.8
U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative rever... 29 8.9
>M38643-2|AAA28940.1| 192|Drosophila melanogaster protein (
D.melanogaster mobileelement jockey gag-specific protein
gene, complete cds.).
Length = 192
Score = 48.4 bits (110), Expect = 1e-05
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Frame = +1
Query: 1 GSARGGGTVIYYRRALHCVPLDPPALANIEASVCRISL-TGHAPIVIASVYLPPDKIVLS 177
G++RGG VI R H PL P ++ + + R+ L T + +A+VYLPP + +
Sbjct: 63 GNSRGGSAVIIKSRLCHS-PLTP--ISTNDRQIARVHLQTSVGTVTVAAVYLPPAERWIV 119
Query: 178 SDIEALLG-IGSSVILAGDLNCKH 246
D +++ +G+ I GD N KH
Sbjct: 120 DDFKSMFAALGNKFIAGGDYNAKH 143
>M22874-2|AAA28675.1| 916|Drosophila melanogaster protein (
D.melanogaster LINEelement J-1, clone J-1. ).
Length = 916
Score = 48.4 bits (110), Expect = 1e-05
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Frame = +1
Query: 1 GSARGGGTVIYYRRALHCVPLDPPALANIEASVCRISL-TGHAPIVIASVYLPPDKIVLS 177
G++RGG VI R H PL P ++ + + R+ L T + +A+VYLPP + +
Sbjct: 63 GNSRGGSAVIIKSRLCHS-PLTP--ISTNDRQIARVHLQTSVGTVTVAAVYLPPAERWIV 119
Query: 178 SDIEALLG-IGSSVILAGDLNCKH 246
D +++ +G+ I GD N KH
Sbjct: 120 DDFKSMFAALGNKFIAGGDYNAKH 143
>M17214-2|AAA28508.1| 858|Drosophila melanogaster protein (
D.melanogaster Fw repetitiveelement putative reverse
transcriptase, complete cds,and putative binding
protein, 3' end. ).
Length = 858
Score = 39.1 bits (87), Expect = 0.006
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Frame = +1
Query: 1 GSARGGGTVIYYRRALHCVPLDPPALANIEASVCRISLTGHAPIVIASVYLPPDKIVLSS 180
G A GG ++ R H + A +++A+ I L + + +A+VY PP VL +
Sbjct: 61 GKAHGGTAILIRNRMKHHFYKEF-AENHLQATSINIQLDDNTLLTLAAVYCPPRFTVLEA 119
Query: 181 D-IEALLGIGSSVILAGDLNCKH 246
++ +G I AGD N KH
Sbjct: 120 QFLDFFQALGPHFIAAGDYNAKH 142
Score = 33.9 bits (74), Expect = 0.24
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +3
Query: 258 SHTTTPNGRRLDALVDNLA--FDIVAPLIPTHYPLNIAHRPDILDIALLKNVT 410
S P G++L + D V+P PT++P ++ PD++D A+ KN++
Sbjct: 147 SRLVNPKGKQLYKTIIKATNKLDHVSPGSPTYWPSDLNKLPDLIDFAVTKNIS 199
>AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.
Length = 1227
Score = 38.7 bits (86), Expect = 0.008
Identities = 25/60 (41%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Frame = +1
Query: 67 PPALANIEASV-CR-ISLTGHAPIVIASVYLPPDKIVLSSDI-EALLGIGSSVILAGDLN 237
P NI +S+ C + L I I + Y+PP +I SSDI E L + S IL GDLN
Sbjct: 78 PHTYRNINSSILCSALQLNFEQVINIVNAYIPPSQIFSSSDISEILQNLNGSTILLGDLN 137
>AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p
protein.
Length = 888
Score = 33.5 bits (73), Expect = 0.31
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Frame = +3
Query: 258 SHTTTPNGRRL-DALVD-NLAFDIVAPLIPTHYPLNIAHRPDILDIALLKNV 407
S TP G++L +AL D V+P PT++P + PD++D A+ K+V
Sbjct: 146 SRLVTPKGKQLYNALTKPENKLDYVSPGKPTYWPADPRKIPDLIDFAITKHV 197
Score = 29.1 bits (62), Expect = 6.8
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Frame = +1
Query: 1 GSARGGGTVIYYRRALHCVPLDPPALANIEASVCRISLTGHAPIVIASVYLPPDKIVLSS 180
G A GG ++ R H L+ ++++ + L + +A+VY PP + +S
Sbjct: 61 GKAHGGTGILIRNRIKHH-HLNNFDKNYLQSTSIALQLN-NGSTTLAAVYCPP-RFPISE 117
Query: 181 D--IEALLGIGSSVILAGDLNCKH 246
D +E +G I AGD N KH
Sbjct: 118 DQFMEFFNTLGDRFIAAGDYNAKH 141
>X17551-2|CAA35587.1| 888|Drosophila melanogaster protein (
D.melanogaster white-one mutant DNA with Doc retroposon,
inserted inwhite locuspromoter region. ).
Length = 888
Score = 31.9 bits (69), Expect = 0.96
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Frame = +3
Query: 258 SHTTTPNGRRL-DALVD-NLAFDIVAPLIPTHYPLNIAHRPDILDIALLKNV 407
S +P G++L +AL D V+P PT++P + PD++D A+ K+V
Sbjct: 146 SRLVSPKGKQLYNALTKPENKLDYVSPGKPTYWPADPRKIPDLIDFAITKHV 197
Score = 29.1 bits (62), Expect = 6.8
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Frame = +1
Query: 1 GSARGGGTVIYYRRALHCVPLDPPALANIEASVCRISLTGHAPIVIASVYLPPDKIVLSS 180
G A GG ++ R H L+ ++++ + L + +A+VY PP + +S
Sbjct: 61 GKAHGGTGILIRNRIKHH-HLNNFDKNYLQSTSIALQLN-NGSTTLAAVYCPP-RFPISE 117
Query: 181 D--IEALLGIGSSVILAGDLNCKH 246
D +E +G I AGD N KH
Sbjct: 118 DQFMEFFNTLGDRFIAAGDYNAKH 141
>X03431-2|CAB57796.1| 1059|Drosophila melanogaster protein (
Drosophila melanogastertransposable element 297. ).
Length = 1059
Score = 30.7 bits (66), Expect = 2.2
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = -2
Query: 493 LHNDGTVGLNLTLKLLRSSVFKKKGPXRVTFFNNAMSSISGR 368
L ++G + LN + L R+S+FKK P V F+N + GR
Sbjct: 55 LTSNGPITLNDLIMLPRNSIFKKTEPFYVHRFSNNYDMLIGR 96
>AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 30.7 bits (66), Expect = 2.2
Identities = 23/59 (38%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = +1
Query: 76 LANIEASVCRISLTGHAPIVIASVY--LPPDKIVLSSDIEALLGIGSSVILAGDLNCKH 246
+A I +S R +T API VY L + E LL S IL GD NCKH
Sbjct: 104 IALIPSSRIRADMTIVAPIYCPPVYKWTTEQFSKLFNHFEMLLDGKSKFILGGDWNCKH 162
>AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 30.7 bits (66), Expect = 2.2
Identities = 23/59 (38%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = +1
Query: 76 LANIEASVCRISLTGHAPIVIASVY--LPPDKIVLSSDIEALLGIGSSVILAGDLNCKH 246
+A I +S R +T API VY L + E LL S IL GD NCKH
Sbjct: 104 IALIPSSRIRADMTIVAPIYCPPVYKWTTEQFSKLFNHFEMLLDGKSKFILGGDWNCKH 162
>AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 30.7 bits (66), Expect = 2.2
Identities = 23/59 (38%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = +1
Query: 76 LANIEASVCRISLTGHAPIVIASVY--LPPDKIVLSSDIEALLGIGSSVILAGDLNCKH 246
+A I +S R +T API VY L + E LL S IL GD NCKH
Sbjct: 104 IALIPSSRIRADMTIVAPIYCPPVYKWTTEQFSKLFNHFEMLLDGKSKFILGGDWNCKH 162
>AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p
protein.
Length = 906
Score = 29.1 bits (62), Expect = 6.8
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +3
Query: 270 TPNGRRLDALVDNLAFDIVAPLIPTHYPLNIAHRPDILDIALLKNV 407
+P GR L + I+A PT YP +H P +D A+ +
Sbjct: 152 SPRGRELAEALSVTGAKILATGSPTRYPYVPSHTPSCIDFAVYHGI 197
>U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative reverse
transcriptase protein.
Length = 1084
Score = 28.7 bits (61), Expect = 8.9
Identities = 21/46 (45%), Positives = 24/46 (52%), Gaps = 7/46 (15%)
Frame = +1
Query: 130 IVIASVYLPPDKIVLS---SDI----EALLGIGSSVILAGDLNCKH 246
IVIASVY PP L +D+ E LG + IL GD N KH
Sbjct: 113 IVIASVYCPPSLRWLPHHFTDVLNFAEKTLGGQTKFILCGDWNAKH 158
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,821,793
Number of Sequences: 53049
Number of extensions: 544771
Number of successful extensions: 1079
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1070
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3417159966
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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