Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0301
         (749 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117204-21|CAB55157.1|  712|Caenorhabditis elegans Hypothetical...    29   2.7  
Z22179-11|CAA80164.1|  444|Caenorhabditis elegans Hypothetical p...    29   4.7  
AF287259-1|AAG24513.1|  444|Caenorhabditis elegans gamma-tubulin...    29   4.7  

>AL117204-21|CAB55157.1|  712|Caenorhabditis elegans Hypothetical
           protein Y116A8C.33 protein.
          Length = 712

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +3

Query: 348 YPLNIAHRPDILDIALLKNVTLXGPFFLKTLDRSSFRVRFRPTVPS 485
           Y L+ A  PD + +  L+NVTL   +    +DR +F  +F   + S
Sbjct: 377 YRLHPAVSPDKVYVEFLRNVTLFSNYLDNVIDRFTFEKKFNKFLDS 422


>Z22179-11|CAA80164.1|  444|Caenorhabditis elegans Hypothetical
           protein F58A4.8 protein.
          Length = 444

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = +3

Query: 249 QVNSHTTTPNGRRLDALVDNLAFDIVAPLIPTHYPLNIAHRPDI-LDIALLKNVTLXGPF 425
           Q+ +HT     + +D  +    F ++ PL   H PL+   RP   +   LL N T   P 
Sbjct: 326 QIEAHTIMTAEQNVDFAIRRPPFYMLKPLRMMHAPLSPYVRPQYKVSGLLLNNSTSVAPL 385

Query: 426 FLKTLDR 446
           F   L +
Sbjct: 386 FESLLSK 392


>AF287259-1|AAG24513.1|  444|Caenorhabditis elegans gamma-tubulin
           protein.
          Length = 444

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = +3

Query: 249 QVNSHTTTPNGRRLDALVDNLAFDIVAPLIPTHYPLNIAHRPDI-LDIALLKNVTLXGPF 425
           Q+ +HT     + +D  +    F ++ PL   H PL+   RP   +   LL N T   P 
Sbjct: 326 QIEAHTIMTAEQNVDFAIRRPPFYMLKPLRMMHAPLSPYVRPQYKVSGLLLNNSTSVAPL 385

Query: 426 FLKTLDR 446
           F   L +
Sbjct: 386 FESLLSK 392


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,239,268
Number of Sequences: 27780
Number of extensions: 263169
Number of successful extensions: 502
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)