Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0298
         (385 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC13B11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 3...    28   0.58 
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c...    25   5.4  
SPAC12B10.09 |||S-adenosylmethionine transporter |Schizosaccharo...    25   5.4  
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy...    24   9.4  

>SPCC13B11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 138

 Score = 27.9 bits (59), Expect = 0.58
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 177 RVWECHALSVKVARRTYLATRHVPHL 254
           R W CH  ++K+ RR++   RH  HL
Sbjct: 18  RRW-CHECTIKIFRRSFDIARHTVHL 42


>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
           catalytic subunit|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1018

 Score = 24.6 bits (51), Expect = 5.4
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +1

Query: 280 KKIVEASPPXSIWHSLRNCVAYQAGVWQNLITKGI 384
           KK +E S   S W S R+ +  Q  VW      G+
Sbjct: 587 KKALEMSASCSYWSSARDRIRSQMVVWDKDAELGV 621


>SPAC12B10.09 |||S-adenosylmethionine transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 345

 Score = 24.6 bits (51), Expect = 5.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 173 ESSMGVSCPERQGCSADVSGXAAC 244
           +S +G+S P+   CSA +   AAC
Sbjct: 156 QSGLGLSDPQIHMCSASLGEIAAC 179


>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1010

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = +3

Query: 102 FCDVXAAEAVRSRINWNKRSICG 170
           FC V   + + + +N+N +++CG
Sbjct: 810 FCAVEIVDRLAAMLNYNLQALCG 832


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,559,710
Number of Sequences: 5004
Number of extensions: 26214
Number of successful extensions: 46
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)