Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0298
         (385 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0067 - 25314741-25315410,25315498-25315892                       28   2.9  
02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216     28   2.9  
07_01_0574 + 4252087-4253973                                           26   8.9  

>05_06_0067 - 25314741-25315410,25315498-25315892
          Length = 354

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 24/75 (32%), Positives = 30/75 (40%), Gaps = 2/75 (2%)
 Frame = -3

Query: 227 IRPPSNLDAQGMTLPYSILPTN*ALVPVYTRPDRFRRADVTKYTTADGSVGRF--RCFLL 54
           +R PS  D  G  LP   L  + A   V    +RF    V  +   +G VGR        
Sbjct: 16  VRSPSVEDNFGAGLPVVDLAADGAAGEVVRACERFGFFKVVSHGVGEGVVGRLEAEAVRF 75

Query: 53  F*SVSNARDAHDRVS 9
           F S   A+DAH   S
Sbjct: 76  FASPQAAKDAHGPAS 90


>02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216
          Length = 1030

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 14/48 (29%), Positives = 27/48 (56%)
 Frame = +1

Query: 55  KRKQRNRPTEPSAVVYFVTSARRKRSGLV*TGTSAQFVGRIEYGSVMP 198
           K    ++P++P+A V + TS+  + S +  +  S++ V  +   SVMP
Sbjct: 43  KENSASKPSKPTAAVRWSTSSIPRASRIPSSVESSKLVSTLRASSVMP 90


>07_01_0574 + 4252087-4253973
          Length = 628

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +1

Query: 91  AVVYFVTSARRKRSGLV*TGTSAQFVGRIEYG 186
           AV  F  SARR+ + L+ +G     VG I+YG
Sbjct: 123 AVYVFWKSARRQSAELIVSGVFVFIVGVIKYG 154


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,555,843
Number of Sequences: 37544
Number of extensions: 209557
Number of successful extensions: 499
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 499
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 636799876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)