Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0298
         (385 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17963| Best HMM Match : RVP (HMM E-Value=0.3)                       27   4.0  
SB_1922| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   4.0  
SB_58593| Best HMM Match : W2 (HMM E-Value=0.0069)                     27   6.9  
SB_16224| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_30475| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.2  
SB_19231| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.2  
SB_5970| Best HMM Match : C2 (HMM E-Value=3.1e-08)                     26   9.2  
SB_621| Best HMM Match : SNF2_N (HMM E-Value=0)                        26   9.2  

>SB_17963| Best HMM Match : RVP (HMM E-Value=0.3)
          Length = 338

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +3

Query: 42  HALKQKKTTKPPNRTVSSC-IFCDVXAAEAV-RSRINWNKRSIC 167
           H+L+QK+TT+P  +   +C + C   +A+ + R R    +R  C
Sbjct: 6   HSLQQKRTTQPQQKAKKNCQVHCTFNSAKLLTRYRKRQRERLEC 49


>SB_1922| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 72

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 204 RSGHDTPILDSPHKLSACSSL 142
           R  HDTPI+D P  ++ CS L
Sbjct: 29  RCTHDTPIVDGPIVITNCSPL 49


>SB_58593| Best HMM Match : W2 (HMM E-Value=0.0069)
          Length = 160

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +3

Query: 51  KQKKTTKPPNRTVSSCIFCDVXAAEAVRSR 140
           +QK  ++P N+  + C+F D   +E  ++R
Sbjct: 91  EQKPLSRPYNKLATKCVFADKNCSETEQNR 120


>SB_16224| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1127

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 13/27 (48%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
 Frame = +2

Query: 185 GVSCPERQGCSADVSGXA-ACXTLEXL 262
           GV CPERQ C  +  G    C  LE L
Sbjct: 111 GVLCPERQRCIVNAEGVGYHCVCLEGL 137


>SB_30475| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 47

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +3

Query: 270 RPMEENRRS-FTTGFHMAFPKKLRCLSGGGLAELDH 374
           RP+  + R+ +T  FH     K+  LSG G+A++ H
Sbjct: 11  RPVFRSLRTRYTRNFHQCADLKMDKLSGFGIADVPH 46


>SB_19231| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 730

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +2

Query: 143 KLEQALNLWGESSMGVSCPERQGCSADV 226
           K++    LWGE  + V   + +GC   V
Sbjct: 276 KIDNVSGLWGELDISVIAADEEGCDGGV 303


>SB_5970| Best HMM Match : C2 (HMM E-Value=3.1e-08)
          Length = 288

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +2

Query: 143 KLEQALNLWGESSMGVSCPERQGCSADV 226
           K++    LWGE  + V   + +GC   V
Sbjct: 101 KIDNVSGLWGELDISVIAADEEGCDGGV 128


>SB_621| Best HMM Match : SNF2_N (HMM E-Value=0)
          Length = 1432

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 110  RXRGGSGQVSYKLEQALNLWGESSMGVSCPERQG 211
            R  GGSG+  +   +A  ++GE S   SC  + G
Sbjct: 1271 RYPGGSGEPGHDPRRAGKIYGERSKERSCERKDG 1304


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,634,994
Number of Sequences: 59808
Number of extensions: 225912
Number of successful extensions: 439
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 656970245
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)