Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0298
         (385 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g39230.1 68417.m05553 isoflavone reductase, putative similar ...    28   2.5  
At2g26890.1 68415.m03226 DNAJ heat shock N-terminal domain-conta...    26   9.9  
At1g77855.1 68414.m09073 hypothetical protein                          26   9.9  
At1g47610.1 68414.m05288 transducin family protein / WD-40 repea...    26   9.9  

>At4g39230.1 68417.m05553 isoflavone reductase, putative similar to
           allergenic isoflavone reductase-like protein Bet v
           6.0102 [Betula pendula][GI:10764491]; contains Pfam
           profile PF02716: Isoflavone reductase
          Length = 308

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +1

Query: 280 KKIVEASPPXSIWHSLRNCVAYQAG 354
           K+I+E+SPP ++  SL +CV  + G
Sbjct: 250 KQIIESSPPLNVMLSLCHCVFVKGG 274


>At2g26890.1 68415.m03226 DNAJ heat shock N-terminal domain-containing
            protein contains Pfam profile PF00226: DnaJ domain
          Length = 2554

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = -2

Query: 177  DSPHKLSA-CSSLYET*PLPP 118
            D P KLS  C SLY+  P+PP
Sbjct: 1419 DYPQKLSQHCHSLYDYAPMPP 1439


>At1g77855.1 68414.m09073 hypothetical protein
          Length = 317

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 15/38 (39%), Positives = 17/38 (44%)
 Frame = +3

Query: 267 GRPMEENRRSFTTGFHMAFPKKLRCLSGGGLAELDHKG 380
           G  M E RRS T    +    + RC  GGG  E   KG
Sbjct: 233 GMMMYEYRRSKTAMEELKVELERRCCGGGGEEEAVEKG 270


>At1g47610.1 68414.m05288 transducin family protein / WD-40 repeat
           family protein contains 7 WD-40 repeats (PF00400);
           similar to En/Spm-like transposon protein (GI:2739374)
           [Arabidopsis thaliana]
          Length = 351

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = -3

Query: 311 EXGGEASTIFFHGXXASGIQVWXMPR 234
           E GG+   + + G     ++VW +PR
Sbjct: 325 EDGGDGRLVLYSGSLDKSVKVWRVPR 350


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,656,926
Number of Sequences: 28952
Number of extensions: 152448
Number of successful extensions: 348
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 348
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 537681456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)