Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0297
         (766 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       24   1.5  
L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protei...    24   1.5  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    22   4.7  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       22   4.7  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 238 QPPQCNECSYEC 203
           +P QCN+C Y C
Sbjct: 257 KPFQCNKCDYTC 268


>L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protein
           protein.
          Length = 69

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 238 QPPQCNECSYEC 203
           +P QCN+C Y C
Sbjct: 15  KPFQCNKCDYTC 26


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +1

Query: 445 GRELMDCTKNDTGRT 489
           GR+LM C +  +G+T
Sbjct: 195 GRDLMSCAQTGSGKT 209


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -2

Query: 627 PQVWAQSGPCENIPGKG 577
           P +  + G C N+PG G
Sbjct: 35  PSICGEHGHCVNLPGVG 51


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,720
Number of Sequences: 336
Number of extensions: 3091
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20546262
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)