Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0297
         (766 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha...    31   0.24 
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    26   6.8  
SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr 2...    25   9.0  

>SPBC776.09 |ste13||ATP-dependent RNA helicase
           Ste13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 30.7 bits (66), Expect = 0.24
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 81  KLHCFDVAFVNLQLNQQMLIVNSVRR 4
           K+HC +  F  LQ+NQ ++  NS  R
Sbjct: 268 KVHCLNTLFSKLQINQSIIFCNSTNR 293


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 303 VVPVYGSLKRYPXPAIHPDLYDNILVSI 386
           ++P++ S KR+     +P L+DN  V I
Sbjct: 139 IIPIFKSKKRFMTSHNNPSLHDNFSVRI 166


>SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 825

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 686 MMSKXDKVTEFNPENLCRNXPKSGLKAGRVRISP 585
           +M+K  +VTE   E+LC+   +     GR  I P
Sbjct: 480 LMAKRGRVTEVLSEHLCQGFMQGYTLTGRTAIFP 513


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,832,695
Number of Sequences: 5004
Number of extensions: 51613
Number of successful extensions: 120
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)