Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0297
         (766 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0553 - 18720436-18720494,18721102-18721106,18721136-187212...    33   0.25 
04_04_0613 + 26617677-26617963,26618726-26618786,26619598-266198...    33   0.25 
02_05_0096 + 25785995-25786311,25786716-25786776,25787825-257880...    33   0.25 
09_04_0717 + 19706160-19706327,19707036-19707157,19707408-197075...    30   2.3  

>10_08_0553 -
           18720436-18720494,18721102-18721106,18721136-18721257,
           18721390-18721478,18722136-18722316,18722403-18722654,
           18722755-18722993,18723680-18723914,18724072-18724132,
           18724632-18724987
          Length = 532

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 87  KNKLHCFDVAFVNLQLNQQMLIVNSVRR 4
           + K+HC +  F  LQ+NQ ++  NSV R
Sbjct: 369 RQKVHCLNTLFSKLQINQSIIFCNSVNR 396


>04_04_0613 +
           26617677-26617963,26618726-26618786,26619598-26619832,
           26619958-26620196,26620493-26620744,26620844-26621024,
           26621810-26621898,26622200-26622273,26622365-26622443
          Length = 498

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 87  KNKLHCFDVAFVNLQLNQQMLIVNSVRR 4
           + K+HC +  F  LQ+NQ ++  NSV R
Sbjct: 346 RQKVHCLNTLFSKLQINQSIIFCNSVNR 373


>02_05_0096 +
           25785995-25786311,25786716-25786776,25787825-25788059,
           25788292-25788530,25789700-25789951,25790043-25790223,
           25790864-25790952,25791269-25791342,25791481-25791584,
           25791919-25791957,25792324-25792436
          Length = 567

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 87  KNKLHCFDVAFVNLQLNQQMLIVNSVRR 4
           + K+HC +  F  LQ+NQ ++  NSV R
Sbjct: 356 RQKVHCLNTLFSKLQINQSIIFCNSVNR 383


>09_04_0717 +
           19706160-19706327,19707036-19707157,19707408-19707510,
           19707644-19707734,19707960-19708132,19708534-19708622,
           19708995-19709085,19709272-19709361,19709807-19709854,
           19710033-19710104,19710181-19710274,19710350-19710494,
           19710809-19710951,19711601-19711751,19712276-19712449,
           19712799-19712874
          Length = 609

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = +1

Query: 598 TRPALS-PDLGXFRHRFSGLNSVTLSXFD 681
           T+P+LS  D G FR + SGL SVT + F+
Sbjct: 408 TQPSLSLQDFGEFRVKLSGLTSVTRNYFE 436


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,327,326
Number of Sequences: 37544
Number of extensions: 337855
Number of successful extensions: 635
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)