Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0297
         (766 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17563| Best HMM Match : DEAD (HMM E-Value=0)                        35   0.083
SB_2247| Best HMM Match : DEAD (HMM E-Value=0)                         35   0.083

>SB_17563| Best HMM Match : DEAD (HMM E-Value=0)
          Length = 439

 Score = 34.7 bits (76), Expect = 0.083
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -2

Query: 87  KNKLHCFDVAFVNLQLNQQMLIVNSVRR 4
           K K+HC +  F  LQ+NQ ++  NSV+R
Sbjct: 276 KQKVHCLNTLFQKLQINQSIIFCNSVQR 303


>SB_2247| Best HMM Match : DEAD (HMM E-Value=0)
          Length = 439

 Score = 34.7 bits (76), Expect = 0.083
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -2

Query: 87  KNKLHCFDVAFVNLQLNQQMLIVNSVRR 4
           K K+HC +  F  LQ+NQ ++  NSV+R
Sbjct: 276 KQKVHCLNTLFQKLQINQSIIFCNSVQR 303


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,227,895
Number of Sequences: 59808
Number of extensions: 400355
Number of successful extensions: 619
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)