Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0297
         (766 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006605-1|AAK85443.1|  430|Caenorhabditis elegans Conserved ger...    33   0.29 
AL117206-6|CAB60450.1|  734|Caenorhabditis elegans Hypothetical ...    29   3.6  

>AC006605-1|AAK85443.1|  430|Caenorhabditis elegans Conserved
           germline helicase protein1 protein.
          Length = 430

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 87  KNKLHCFDVAFVNLQLNQQMLIVNSVRR 4
           K K+HC +  F  LQ+NQ ++  NS +R
Sbjct: 265 KQKVHCLNTLFRKLQINQSIIFCNSTQR 292


>AL117206-6|CAB60450.1|  734|Caenorhabditis elegans Hypothetical
           protein Y67A10A.9 protein.
          Length = 734

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
 Frame = -2

Query: 453 LSAMTKTPQKNRVRFDYXLQPP---ILTLKYCHTNLGVS 346
           L +  KTPQ+ R   ++ +QPP   I T +YC + +GVS
Sbjct: 381 LKSALKTPQQTRR--EHIIQPPEPVINTYEYCDSTIGVS 417


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,739,725
Number of Sequences: 27780
Number of extensions: 294154
Number of successful extensions: 562
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)