Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0297
         (766 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    24   1.3  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   3.1  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   3.1  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   3.1  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   4.1  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    22   7.2  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +1

Query: 64  IKTMKLIFYGLLIFSLAKATSQK 132
           +K + LIFYG ++FS+ +   ++
Sbjct: 19  VKIVLLIFYGSIMFSMTQVNKEE 41


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 442 HGRELMDCTKNDTGRTXSGAXGDIFNT 522
           +GR+LM C +  +G+T + A   I NT
Sbjct: 232 NGRDLMACAQTGSGKTAAFAV-PIINT 257


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 264 FPELCLTNKTTAFVVPVYGSL 326
           FP LC  N   AF+VP + +L
Sbjct: 45  FPYLCYKNGGGAFMVPYFIAL 65


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 264 FPELCLTNKTTAFVVPVYGSL 326
           FP LC  N   AF+VP + +L
Sbjct: 98  FPYLCYKNGGGAFMVPYFIAL 118


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +1

Query: 178 IMSDDVEDNIRNYIHYIEEAAKQ 246
           + +D   +N  NY HY    AKQ
Sbjct: 70  LATDTTSENEENYPHYQMSGAKQ 92


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -1

Query: 238 QPPQCNECSYEC 203
           +P +C +CSY C
Sbjct: 15  KPFKCEKCSYSC 26


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,935
Number of Sequences: 438
Number of extensions: 3592
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)