Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0296
         (587 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       23   1.4  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    23   1.9  
AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    22   3.3  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    22   3.3  
AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450 ...    22   4.4  
AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450 ...    21   5.8  
EF222290-1|ABN79650.1|  378|Tribolium castaneum adipokinetic hor...    21   7.7  
DQ422965-1|ABE02225.1|  378|Tribolium castaneum adipokinetic hor...    21   7.7  
AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    21   7.7  

>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = -2

Query: 214 LSSAVHIRRTPSARTVESRQRSLSSYPNRRYGSW 113
           LSS  H    PS R +    R   +Y    + SW
Sbjct: 286 LSSIRHPESNPSERVMRELGRIFRAYCRENHASW 319


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -1

Query: 197 YSSDTKCTHSGKSSTVALFLPKSKIRILGS 108
           Y+ D  CTH      +++  P+S    +GS
Sbjct: 365 YNQDVSCTHYQNPEYISVVNPESPYPQIGS 394


>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +2

Query: 257 KELRKGSVPYPA*DFTLSTLS-ASIKCY 337
           K LRK  VP  A   TLS+L+  S+K Y
Sbjct: 26  KGLRKQGVPREATKITLSSLAKGSLKQY 53


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -3

Query: 189 GHQVHAQWKVVN 154
           GH +HAQ  VVN
Sbjct: 327 GHHIHAQHHVVN 338


>AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 491

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -2

Query: 196 IRRTPSARTVESRQRSLSSYP 134
           I RTP    +  R+R L  YP
Sbjct: 48  IMRTPEQMFLADRERGLKYYP 68


>AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q4 protein.
          Length = 491

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -2

Query: 196 IRRTPSARTVESRQRSLSSYP 134
           I RTP    +  R+R L  YP
Sbjct: 48  IMRTPEQLFLAERERGLKYYP 68


>EF222290-1|ABN79650.1|  378|Tribolium castaneum adipokinetic
           hormone receptor protein.
          Length = 378

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -3

Query: 48  SCWPAPHGDLYLVP 7
           SC P P+GD  L P
Sbjct: 356 SCIPTPNGDSRLPP 369


>DQ422965-1|ABE02225.1|  378|Tribolium castaneum adipokinetic
           hormone receptor protein.
          Length = 378

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -3

Query: 48  SCWPAPHGDLYLVP 7
           SC P P+GD  L P
Sbjct: 356 SCIPTPNGDSRLPP 369


>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -1

Query: 560 LSLDT*NLFDXRGXLKXARPQSFDDL 483
           +S D  N F  +   +   PQSF+D+
Sbjct: 69  ISSDEENSFQGKHKSRRKAPQSFEDI 94


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,517
Number of Sequences: 336
Number of extensions: 3301
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14726181
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)