Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0296
(587 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch... 210 2e-55
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc... 210 2e-55
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual 29 0.50
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 27 1.5
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 2.7
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz... 26 3.5
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 25 6.2
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|... 25 6.2
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe... 25 6.2
SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8 |Schizo... 25 6.2
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|... 25 6.2
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 25 6.2
SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein L37|Schizosac... 25 8.2
SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein L37|S... 25 8.2
>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 221
Score = 210 bits (512), Expect = 2e-55
Identities = 96/128 (75%), Positives = 107/128 (83%)
Frame = +1
Query: 28 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 207
M RRPARCYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ+
Sbjct: 1 MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60
Query: 208 SSEALEAGRICCNKYL*RTAERISSISSMRLHPFHVIRINKMLSCAGADRLQTGMRGAFX 387
+SEALEA RIC NKYL + + S +R HPFHV+RINKMLSCAGADRLQTGMR AF
Sbjct: 61 TSEALEAARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFG 120
Query: 388 KPQGTVAR 411
KP G VAR
Sbjct: 121 KPNGLVAR 128
Score = 38.3 bits (85), Expect = 8e-04
Identities = 20/47 (42%), Positives = 28/47 (59%)
Frame = +3
Query: 435 IGQPIMSLRSSDRXXAQVIEALRPCXFQXPPXVKKILRIQRKXGFHQ 575
IGQ +MS+R+ D A IEALR C ++ P + I + +K GF Q
Sbjct: 131 IGQVLMSVRTKDSSRATAIEALRRCQYKFPGQQRII--VSKKWGFSQ 175
>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 221
Score = 210 bits (512), Expect = 2e-55
Identities = 96/128 (75%), Positives = 107/128 (83%)
Frame = +1
Query: 28 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 207
M RRPARCYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ+
Sbjct: 1 MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60
Query: 208 SSEALEAGRICCNKYL*RTAERISSISSMRLHPFHVIRINKMLSCAGADRLQTGMRGAFX 387
+SEALEA RIC NKYL + + S +R HPFHV+RINKMLSCAGADRLQTGMR AF
Sbjct: 61 TSEALEAARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFG 120
Query: 388 KPQGTVAR 411
KP G VAR
Sbjct: 121 KPNGLVAR 128
Score = 37.9 bits (84), Expect = 0.001
Identities = 20/47 (42%), Positives = 28/47 (59%)
Frame = +3
Query: 435 IGQPIMSLRSSDRXXAQVIEALRPCXFQXPPXVKKILRIQRKXGFHQ 575
IGQ +MS+R+ D A IEALR C ++ P + I + +K GF Q
Sbjct: 131 IGQILMSVRTKDSSRATAIEALRRCQYKFPGQQRII--VSKKWGFSQ 175
>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 405
Score = 29.1 bits (62), Expect = 0.50
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +1
Query: 52 YRYCKNKPYPKSRFCRGVPDP-KIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEA 228
Y+ N ++FC V + KI + +KRA +D LC+ +S + E ++ +LE+
Sbjct: 34 YQKVPNSHKEFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLES 93
Query: 229 G 231
G
Sbjct: 94 G 94
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 27.5 bits (58), Expect = 1.5
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +1
Query: 109 DPKIRIFDLGKKRATVDDFPLCV-HLVSDEYEQLSSEALEA 228
DPK+R+F KRAT + C LV+ + + S +++A
Sbjct: 320 DPKLRVFPFTTKRATHSELLRCYKELVTPKISHVDSISIKA 360
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 26.6 bits (56), Expect = 2.7
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 426 PGKKTTCYSTLRLAKRTTHPSLEPISSS 343
P + +T +LAKR T PSL P S+
Sbjct: 949 PPRSEPVSTTTKLAKRITQPSLSPARST 976
>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 26.2 bits (55), Expect = 3.5
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +2
Query: 143 RERPLTTFHCACTWCPTNMNS 205
R RP +T H +CT+C + S
Sbjct: 459 RSRPDSTSHASCTYCVARLRS 479
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2685
Score = 25.4 bits (53), Expect = 6.2
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = -3
Query: 141 LTQIEDTDLGIRYTPTEPRFRIRFIFAVPVASCWPAPH 28
L Q++++ L + T T P +R V SC+P H
Sbjct: 408 LHQLQNSILRVNSTLTSPSLDLRLELLHDVLSCFPKKH 445
>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1234
Score = 25.4 bits (53), Expect = 6.2
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = -3
Query: 228 CLQSL*AQLFIFVGHQVHAQWKVVNGRSLLTQIEDTDLG 112
CL L L + H++ ++W+ +N R LL + + + G
Sbjct: 940 CLLPLLPALLSELDHKLVSEWRRINDRGLLVEEDAEETG 978
>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 871
Score = 25.4 bits (53), Expect = 6.2
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -2
Query: 268 PQFFTGTYCSRYVLPPKPLSSAVHIRRTPSARTVES 161
P FTG +PP+P+ SA+ + SA ++E+
Sbjct: 498 PTKFTGGASESSSVPPRPIPSAMKGKAPASAISIEA 533
>SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 569
Score = 25.4 bits (53), Expect = 6.2
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 8/75 (10%)
Frame = -2
Query: 244 CSRYVLPP-KP-LSSAVHIRRTPSARTVESRQRS------LSSYPNRRYGSWDQVHPDRT 89
C++ + PP KP + SA+ S T E S LS +R+ +W P
Sbjct: 494 CAKKIQPPFKPSVESAIDTSNFDSEFTSEIPMDSVVADSHLSETVQQRFANWSYQRPTTI 553
Query: 88 SISDTVYFCSTGSIL 44
SD + + GS++
Sbjct: 554 DTSDDINTIAPGSVI 568
>SPAC3A12.05c |taf2||TATA-binding protein associated factor
Taf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1174
Score = 25.4 bits (53), Expect = 6.2
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +2
Query: 95 VGVYLIPRSVSSIWV 139
+GVYLIP++ S +W+
Sbjct: 394 IGVYLIPKAWSDLWL 408
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.4 bits (53), Expect = 6.2
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 130 DLGKKRATVDDFPLCVHLVSDEYEQL 207
++ KKRA DD + +VS EYE L
Sbjct: 1033 EIEKKRAENDDLQSKLSVVSSEYENL 1058
>SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein
L37|Schizosaccharomyces pombe|chr 1|||Manual
Length = 89
Score = 25.0 bits (52), Expect = 8.2
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +3
Query: 258 KNCGKDQFHIQHETSPFPRYP 320
+ CGK FHIQ T YP
Sbjct: 20 RRCGKRSFHIQKSTCACCGYP 40
>SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein
L37|Schizosaccharomyces pombe|chr 3|||Manual
Length = 91
Score = 25.0 bits (52), Expect = 8.2
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +3
Query: 258 KNCGKDQFHIQHETSPFPRYP 320
+ CGK FHIQ T YP
Sbjct: 20 RRCGKRSFHIQKSTCACCGYP 40
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,548,853
Number of Sequences: 5004
Number of extensions: 52571
Number of successful extensions: 162
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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