Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0296
(587 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0740 + 6243517-6243526,6244822-6245323,6245415-6245496,624... 208 3e-54
03_02_0897 - 12239375-12239458,12240035-12240116,12240213-122407... 194 6e-50
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408... 190 9e-49
11_08_0094 - 28314681-28314747,28315264-28315353,28315589-283157... 30 1.6
04_04_1108 + 30961600-30962013,30963131-30964465 28 4.8
01_07_0275 + 42434082-42435152 28 4.8
10_08_0141 + 15159160-15159306,15159708-15159815,15159958-151600... 28 6.3
07_03_0011 + 12370624-12370684,12372573-12372718,12372793-123731... 28 6.3
01_01_1123 - 8902598-8903019,8903390-8903555,8903805-8903996,890... 28 6.3
02_05_0844 - 32144417-32144764,32145588-32145686,32146218-321464... 27 8.4
>11_01_0740 +
6243517-6243526,6244822-6245323,6245415-6245496,
6245741-6245821
Length = 224
Score = 208 bits (507), Expect = 3e-54
Identities = 110/183 (60%), Positives = 125/183 (68%)
Frame = +1
Query: 28 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 207
MGRRPARCYR KNKPYPKSR+CRGVPDPKIRI+D+G K+ VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPYCVHLVSWEKENV 60
Query: 208 SSEALEAGRICCNKYL*RTAERISSISSMRLHPFHVIRINKMLSCAGADRLQTGMRGAFX 387
SSEALEA RI CNKY+ + A + + +R+HPFHV+RINKMLSCAGADRLQTGMRGAF
Sbjct: 61 SSEALEAARIACNKYMTKNAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
Query: 388 KPQGTVARGFFPGXPKLDSPSCHCALVTGXXHRSSKLCGRAXFXFPRXSKRFYVSKESXG 567
KPQGT AR G L S C + H L RA F FP K + G
Sbjct: 121 KPQGTCARVDI-GQVLL---SVRCK-ESNAKHAEEAL-RRAKFKFPGRQK--IIHSRKWG 172
Query: 568 FTK 576
FTK
Sbjct: 173 FTK 175
>03_02_0897 -
12239375-12239458,12240035-12240116,12240213-12240714,
12241150-12241303,12241458-12241629,12242237-12242443,
12242926-12243323
Length = 532
Score = 194 bits (472), Expect = 6e-50
Identities = 103/179 (57%), Positives = 120/179 (67%)
Frame = +1
Query: 40 PARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEA 219
P RCYR KNKPYPKSR+CRGVPDPKIRIFD+G+K+ + DDFPLCVHLVS E E +SSEA
Sbjct: 312 PVRCYRQIKNKPYPKSRYCRGVPDPKIRIFDVGQKKRSADDFPLCVHLVSWEKENVSSEA 371
Query: 220 LEAGRICCNKYL*RTAERISSISSMRLHPFHVIRINKMLSCAGADRLQTGMRGAFXKPQG 399
LEA RI CNKY+ + A + + + HP+HV+RINKMLSCAGADRLQTGMRGAF KP G
Sbjct: 372 LEAARIACNKYMAKHAGKDAFHLRVCAHPYHVLRINKMLSCAGADRLQTGMRGAFGKPTG 431
Query: 400 TVARGFFPGXPKLDSPSCHCALVTGXXHRSSKLCGRAXFXFPRXSKRFYVSKESXGFTK 576
T AR L S C A H L RA F FP + + +K GFT+
Sbjct: 432 TCARVRI--GQVLLSVRCRDA---NAAHAQEAL-RRAKFKFPGRQRVIFSAK--WGFTR 482
>05_01_0490 +
4083768-4083775,4083845-4084336,4084441-4084522,
4086671-4087357,4087555-4087813,4088435-4088558,
4089474-4089564
Length = 580
Score = 190 bits (462), Expect = 9e-49
Identities = 102/176 (57%), Positives = 118/176 (67%)
Frame = +1
Query: 49 CYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEA 228
CYR KNKPYPKSR+CRGVPDPKIRI+D+G K+ VD+F CVHLVS E E ++SEALEA
Sbjct: 4 CYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFSHCVHLVSWEKENVTSEALEA 63
Query: 229 GRICCNKYL*RTAERISSISSMRLHPFHVIRINKMLSCAGADRLQTGMRGAFXKPQGTVA 408
RI CNKY+ ++A + + +R+HPFHV+RINKMLSCAGADRLQTGMRGAF KPQGT A
Sbjct: 64 ARIACNKYMTKSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCA 123
Query: 409 RGFFPGXPKLDSPSCHCALVTGXXHRSSKLCGRAXFXFPRXSKRFYVSKESXGFTK 576
R G L S C H S L RA F FP K + GFTK
Sbjct: 124 RVDI-GQVLL---SVRCK-PNNAVHASEAL-RRAKFKFPGRQK--IIESRKWGFTK 171
>11_08_0094 -
28314681-28314747,28315264-28315353,28315589-28315725,
28317020-28317589
Length = 287
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = -2
Query: 268 PQFFTGTYCSRYVLPPKPLSSAVHIRRTPSARTVESRQRSLSSYPNRR 125
P+F+T ++C R + L +++ R AR + RQ S SS P+ +
Sbjct: 50 PRFYTCSFCQREFRSAQALGGHMNVHRRDRAR-LRQRQTSSSSSPSHQ 96
>04_04_1108 + 30961600-30962013,30963131-30964465
Length = 582
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = -2
Query: 268 PQFFTGTYCSRYVLPPKPLSSAVHIRRTPSARTVESRQRSLSS 140
P F+ C + PP PL++ V + P+A + S + +++S
Sbjct: 95 PGRFSCPLCGAEIAPPPPLAAVVSVVAPPAAIPITSNRPAMTS 137
>01_07_0275 + 42434082-42435152
Length = 356
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -2
Query: 88 SISDTVYFCSTGSILLAGAPW*SLP 14
S SD V + S+LLAG PW +P
Sbjct: 132 SCSDIVTLAARDSVLLAGGPWYDVP 156
>10_08_0141 +
15159160-15159306,15159708-15159815,15159958-15160006,
15160067-15160182,15160358-15160399,15161026-15161442,
15162356-15162509,15162911-15162975,15163793-15163870,
15163951-15164061,15164227-15164271,15164677-15164850,
15165383-15166335,15166471-15166681,15167037-15167196,
15168786-15169174
Length = 1072
Score = 27.9 bits (59), Expect = 6.3
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +1
Query: 151 TVDDFPLC-VHLVSDEYEQLSSEALEAGRICCNKYL 255
T D P C +HL SD Y S E ++AG+ C L
Sbjct: 587 TTDWNPRCDIHLKSDGYTNYSLETVQAGKQQCKAAL 622
>07_03_0011 +
12370624-12370684,12372573-12372718,12372793-12373129,
12374323-12374452,12375346-12375406,12375572-12375618,
12376873-12376950,12377195-12377345,12377495-12377558,
12377735-12377893,12378007-12378128,12378952-12378981,
12379050-12379124,12379563-12379644,12379809-12379938,
12381417-12382164,12382833-12383054,12383127-12383276,
12384851-12384904,12384985-12385058,12386130-12386204,
12386365-12386584
Length = 1071
Score = 27.9 bits (59), Expect = 6.3
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = +2
Query: 20 RSPWGAGQQDATGTAKINRIRNRGSVGVYLIPRSVSSIWVRRERPLTTFHCACTWCP 190
R+ A Q +TGT K + R G + L + V ++ P+ F AC W P
Sbjct: 199 RASKSAWSQSSTGTRKWMQYRPAGETSLTLPCQGVLNLIATGPTPMDVF--ACAWSP 253
>01_01_1123 -
8902598-8903019,8903390-8903555,8903805-8903996,
8904125-8904388
Length = 347
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -2
Query: 112 DQVHPDRTSISDTVYFCSTGSILLAGAPW*SLP 14
++ P S +DT+ + GS +L+G P+ LP
Sbjct: 129 EEACPHTVSCADTIALAARGSTVLSGGPYWELP 161
>02_05_0844 -
32144417-32144764,32145588-32145686,32146218-32146410,
32147049-32147107,32147189-32147263,32147557-32147670,
32147776-32147895,32148204-32148216,32148421-32148512,
32149078-32149164,32149254-32149328,32149630-32149680,
32149852-32149947,32150135-32150221,32150312-32150368,
32150475-32150600,32150709-32150949,32151028-32151114,
32151260-32151637,32152847-32153187
Length = 912
Score = 27.5 bits (58), Expect = 8.4
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -2
Query: 169 VESRQRSLSSYPNRRYGSWDQVHPDRTSISDTVYFCSTG 53
+ S + + S GSW H D +++ DT+ CS+G
Sbjct: 758 MNSSNQQIGSPSEEDLGSWGH-HSDPSTVPDTILQCSSG 795
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,618,961
Number of Sequences: 37544
Number of extensions: 385439
Number of successful extensions: 958
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 952
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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