Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0296
         (587 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47652| Best HMM Match : Ribosomal_L10e (HMM E-Value=0.0041)         31   0.53 
SB_8536| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.6  
SB_57196| Best HMM Match : ADAM_spacer1 (HMM E-Value=3.1e-31)          29   2.1  
SB_28115| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_56325| Best HMM Match : Ribosomal_L14e (HMM E-Value=0.84)           29   2.8  
SB_12964| Best HMM Match : RVT_1 (HMM E-Value=5.6e-31)                 29   2.8  
SB_4321| Best HMM Match : Ank (HMM E-Value=0)                          28   4.9  
SB_4930| Best HMM Match : ANF_receptor (HMM E-Value=0)                 27   8.6  
SB_45389| Best HMM Match : Peptidase_M13 (HMM E-Value=4.1e-09)         27   8.6  

>SB_47652| Best HMM Match : Ribosomal_L10e (HMM E-Value=0.0041)
          Length = 50

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = +3

Query: 435 IGQPIMSLRSSDRXXAQVIEALRPCXFQXP 524
           IGQ I+S+R+ D   A  IEALR   F+ P
Sbjct: 17  IGQTIISIRTKDGNKAAAIEALRRAKFKFP 46



 Score = 30.7 bits (66), Expect = 0.92
 Identities = 13/14 (92%), Positives = 13/14 (92%)
 Frame = +1

Query: 370 MRGAFXKPQGTVAR 411
           MRGAF KPQGTVAR
Sbjct: 1   MRGAFGKPQGTVAR 14


>SB_8536| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1029

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
 Frame = +1

Query: 136  GKKRATVDDFPLCV-HLVSDEYEQLSSEALEA---GRICCNKYL*RTAERISSISSMRLH 303
            G+  AT DD    +    +DE   L   A  A     +C NK + +TA +IS +SS+ L 
Sbjct: 906  GRPYATKDDVKESLKRAAADEGFDLECRANSATVRATVCLNKDMGKTAAQISVMSSVNLS 965

Query: 304  PFHVIRINKMLSCAGAD 354
               V RI       G D
Sbjct: 966  SRAVTRIMNKCPAQGTD 982


>SB_57196| Best HMM Match : ADAM_spacer1 (HMM E-Value=3.1e-31)
          Length = 718

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +2

Query: 32  GAGQQDATGTAKINRIRNRGSVGVYLIPRSVSSIWVRRERPLTTF 166
           G G    T     N++  +G V   LIP+   +I VR  +P T+F
Sbjct: 313 GNGTACYTVEGSFNQLAGKGYVEAALIPKGARNIRVREVKPCTSF 357


>SB_28115| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 698

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -2

Query: 223 PKPLSSAVHIRRTPSARTVESRQRSLSSYPNRRYGSWDQ 107
           PK  SS V+  RT  AR    ++R++  Y  ++YG W Q
Sbjct: 295 PKFFSSIVYYGRT--ARFDYGKRRNMKRYGKKKYGKWRQ 331


>SB_56325| Best HMM Match : Ribosomal_L14e (HMM E-Value=0.84)
          Length = 650

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -1

Query: 251 YLLQQIRPASKASELSCSYSSDTKCTHSGKSSTVALFLPKSKIR 120
           Y+++QI+ ASK   L     + T C  + K S V  F+ K K R
Sbjct: 252 YIVKQIQVASKVKVLKAKLENQTLCQQT-KRSKVTDFISKQKSR 294


>SB_12964| Best HMM Match : RVT_1 (HMM E-Value=5.6e-31)
          Length = 1273

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -1

Query: 251  YLLQQIRPASKASELSCSYSSDTKCTHSGKSSTVALFLPKSKIR 120
            Y+++QI+ ASK   L     + T C  + K S V  F+ K K R
Sbjct: 1020 YIVKQIQVASKVKVLKAKLENQTLCQQT-KRSKVTDFISKQKSR 1062


>SB_4321| Best HMM Match : Ank (HMM E-Value=0)
          Length = 915

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/62 (27%), Positives = 26/62 (41%)
 Frame = +1

Query: 55  RYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGR 234
           R CK K   ++R C+G    + R+     K    D+  +C    SDE      E  +  R
Sbjct: 444 RMCKGKGRDETRMCKGEGTDETRMC----KSEGTDETRMCKDEGSDETRMCKDEGTDETR 499

Query: 235 IC 240
           +C
Sbjct: 500 MC 501


>SB_4930| Best HMM Match : ANF_receptor (HMM E-Value=0)
          Length = 1127

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -1

Query: 233  RPASKASELSCSYSSDTKCTHSGKSSTVALFLPKSKIR 120
            R +S+ S+ SC+ S  +    SGK   + LF  KS+ R
Sbjct: 983  RKSSRTSQRSCASSMSSSSAESGKLEQLNLFDGKSRKR 1020


>SB_45389| Best HMM Match : Peptidase_M13 (HMM E-Value=4.1e-09)
          Length = 177

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = +1

Query: 220 LEAGRICCNKYL*RTAERISSISSMRLHPFHVIRINKMLS 339
           L    I C  Y    AE    I  M +HP H IRIN ++S
Sbjct: 115 LSYAHIFCGSYSKNAAE---DIVRMSVHPLHPIRINGVVS 151


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,900,499
Number of Sequences: 59808
Number of extensions: 432204
Number of successful extensions: 1128
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1126
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1422302661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)