Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0296
         (587 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical pr...   211   2e-55
AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical ...    30   1.4  
Z68760-10|CAL49442.1| 1427|Caenorhabditis elegans Hypothetical p...    28   4.3  
Z68760-9|CAJ80808.1| 1379|Caenorhabditis elegans Hypothetical pr...    28   4.3  
Z68760-8|CAA92996.1| 1398|Caenorhabditis elegans Hypothetical pr...    28   4.3  
AF099919-10|AAC68792.1|  205|Caenorhabditis elegans Max-like pro...    28   4.3  
AF016450-13|AAB65988.2|  472|Caenorhabditis elegans Hypothetical...    28   5.7  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    27   7.5  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    27   7.5  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    27   7.5  
Z81589-2|CAB04724.1|  728|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical
           protein F10B5.1 protein.
          Length = 214

 Score =  211 bits (516), Expect = 2e-55
 Identities = 108/183 (59%), Positives = 122/183 (66%)
 Frame = +1

Query: 28  MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 207
           MGRRPARCYRY KNKPYPKSRFCRGVPD KIRIFDLG KRA VD FP CVH++S+E E L
Sbjct: 1   MGRRPARCYRYIKNKPYPKSRFCRGVPDAKIRIFDLGNKRANVDTFPACVHMMSNEREHL 60

Query: 208 SSEALEAGRICCNKYL*RTAERISSISSMRLHPFHVIRINKMLSCAGADRLQTGMRGAFX 387
           SSEALEA RIC NKY+ +   +      +R HPFHV RINKMLSCAGADRLQTGMRGA+ 
Sbjct: 61  SSEALEAARICANKYMVKNCGKDGFHLRVRKHPFHVTRINKMLSCAGADRLQTGMRGAYG 120

Query: 388 KPQGTVARGFFPGXPKLDSPSCHCALVTGXXHRSSKLCGRAXFXFPRXSKRFYVSKESXG 567
           KPQG VAR        +        +  G    + +   RA F FP   ++  VS    G
Sbjct: 121 KPQGLVAR------VDIGDILFSMRIKEGNVKHAIEAFRRAKFKFP--GRQIIVSSRKWG 172

Query: 568 FTK 576
           FTK
Sbjct: 173 FTK 175


>AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical
           protein D1007.15 protein.
          Length = 1184

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 25/79 (31%), Positives = 38/79 (48%)
 Frame = -3

Query: 273 PFRSSLQVLIAADTSCLQSL*AQLFIFVGHQVHAQWKVVNGRSLLTQIEDTDLGIRYTPT 94
           P ++ L+  ++AD S LQ    QL   + H V   + +    +LL  I  T +   Y+  
Sbjct: 226 PIKNHLETALSADDSPLQ-FDYQLQYMI-HNVFEHYVIPV--ALLCSILGTIVRFCYSDD 281

Query: 93  EPRFRIRFIFAVPVASCWP 37
           E  F  RF+FAVP  +  P
Sbjct: 282 ENLFGTRFVFAVPSLTVLP 300


>Z68760-10|CAL49442.1| 1427|Caenorhabditis elegans Hypothetical
            protein F36H1.2c protein.
          Length = 1427

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 42   SKMLPVLQK*TVSEIEVLSGCT*SQDPYLR 131
            SK +P  ++ TV  ++    CT S DPYLR
Sbjct: 1042 SKGIPSAERLTVGHVKKFVPCTSSLDPYLR 1071


>Z68760-9|CAJ80808.1| 1379|Caenorhabditis elegans Hypothetical protein
            F36H1.2b protein.
          Length = 1379

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 42   SKMLPVLQK*TVSEIEVLSGCT*SQDPYLR 131
            SK +P  ++ TV  ++    CT S DPYLR
Sbjct: 1013 SKGIPSAERLTVGHVKKFVPCTSSLDPYLR 1042


>Z68760-8|CAA92996.1| 1398|Caenorhabditis elegans Hypothetical protein
            F36H1.2a protein.
          Length = 1398

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 42   SKMLPVLQK*TVSEIEVLSGCT*SQDPYLR 131
            SK +P  ++ TV  ++    CT S DPYLR
Sbjct: 1013 SKGIPSAERLTVGHVKKFVPCTSSLDPYLR 1042


>AF099919-10|AAC68792.1|  205|Caenorhabditis elegans Max-like
           protein 2 protein.
          Length = 205

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +1

Query: 88  RFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGR 234
           R C  +   K  I D  K+ A ++     + +++ EYEQ++S   +AG+
Sbjct: 93  RACDFMSQLKTDISDADKQLAQLNAQAAALEMIASEYEQMASSVPDAGQ 141


>AF016450-13|AAB65988.2|  472|Caenorhabditis elegans Hypothetical
           protein B0238.9 protein.
          Length = 472

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 18/85 (21%), Positives = 36/85 (42%)
 Frame = +2

Query: 68  INRIRNRGSVGVYLIPRSVSSIWVRRERPLTTFHCACTWCPTNMNS*AQRLWRQDVSAAI 247
           + R+ + GS   + +P+  +++W R+ + L    C C      M    Q L+ ++ +   
Sbjct: 82  VKRLASLGSARGWTVPQRRNNLWERKGQSLIGKFCRCRCDRGQMTRDKQALYEKEKAVEK 141

Query: 248 STCKELRKGSVPYPA*DFTLSTLSA 322
              K+ +K     P   F    L+A
Sbjct: 142 EKKKKAKKAK-QLPQLQFNSKPLAA 165


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -3

Query: 150 RSLLTQIED--TDLGIRYTPTEPRFRIRFIFAVPVA 49
           RS +  IE   +D+ +  TP +P+   +F+F VPVA
Sbjct: 593 RSYMKLIETAISDILLHRTPIDPQADYKFVFEVPVA 628


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -3

Query: 150 RSLLTQIED--TDLGIRYTPTEPRFRIRFIFAVPVA 49
           RS +  IE   +D+ +  TP +P+   +F+F VPVA
Sbjct: 593 RSYMKLIETAISDILLHRTPIDPQADYKFVFEVPVA 628


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -3

Query: 150 RSLLTQIED--TDLGIRYTPTEPRFRIRFIFAVPVA 49
           RS +  IE   +D+ +  TP +P+   +F+F VPVA
Sbjct: 176 RSYMKLIETAISDILLHRTPIDPQADYKFVFEVPVA 211


>Z81589-2|CAB04724.1|  728|Caenorhabditis elegans Hypothetical
           protein T08G5.2 protein.
          Length = 728

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = +2

Query: 191 TNMNS*AQRLWRQDVSAAISTCKELRKGSVPYPA*DFTLSTLSASIKCYHALELIGSRLG 370
           T M +  Q L       A +T K + K    +P    +L TL  S +CY+ALE + S + 
Sbjct: 386 TTMKTIMQNLTTSSHQVATTTAKAVTK----FPKTCESLDTLVQSSQCYYALEGLDSSMS 441

Query: 371 CV 376
            +
Sbjct: 442 AM 443


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,367,690
Number of Sequences: 27780
Number of extensions: 307999
Number of successful extensions: 749
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)