Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0296
(587 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) / Wi... 206 1e-53
At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Near... 205 1e-53
At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C) cont... 201 2e-52
At5g48310.1 68418.m05968 expressed protein 31 0.57
At1g48400.1 68414.m05406 F-box family protein contains F-box dom... 28 5.3
At1g53180.1 68414.m06027 expressed protein 27 9.3
>At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) /
Wilm's tumor suppressor protein-related similar to tumor
suppressor GI:575354 from [Oryza sativa]
Length = 220
Score = 206 bits (502), Expect = 1e-53
Identities = 110/183 (60%), Positives = 127/183 (69%)
Frame = +1
Query: 28 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 207
MGRRPARCYR K KPYPKSR+CRGVPDPKIRI+D+G KR VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60
Query: 208 SSEALEAGRICCNKYL*RTAERISSISSMRLHPFHVIRINKMLSCAGADRLQTGMRGAFX 387
SSEALEA RI CNKY+ ++A + + +R+HPFHV+RINKMLSCAGADRLQTGMRGAF
Sbjct: 61 SSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
Query: 388 KPQGTVARGFFPGXPKLDSPSCHCALVTGXXHRSSKLCGRAXFXFPRXSKRFYVSKESXG 567
K GT AR G L S C G H + + RA F FP K VS++ G
Sbjct: 121 KALGTCARVAI-GQVLL---SVRCKDAHG--HHAQEALRRAKFKFPGRQK-IIVSRK-WG 172
Query: 568 FTK 576
FTK
Sbjct: 173 FTK 175
>At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Nearly
identical to ribosomal protein L10.e, Wilm's tumor
suppressor homologue, gi|17682 (Z15157), however
differences in sequence indicate this is a different
member of the L10 family
Length = 221
Score = 205 bits (501), Expect = 1e-53
Identities = 110/183 (60%), Positives = 127/183 (69%)
Frame = +1
Query: 28 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 207
MGRRPARCYR K KPYPKSR+CRGVPDPKIRI+D+G KR VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPYCVHLVSWEKENV 60
Query: 208 SSEALEAGRICCNKYL*RTAERISSISSMRLHPFHVIRINKMLSCAGADRLQTGMRGAFX 387
SSEALEA RI CNKY+ ++A + + +R+HPFHV+RINKMLSCAGADRLQTGMRGAF
Sbjct: 61 SSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
Query: 388 KPQGTVARGFFPGXPKLDSPSCHCALVTGXXHRSSKLCGRAXFXFPRXSKRFYVSKESXG 567
K GT AR G L S C G H + + RA F FP K VS++ G
Sbjct: 121 KALGTCARVAI-GQVLL---SVRCKDAHG--HHAQEALRRAKFKFPGRQK-IIVSRK-WG 172
Query: 568 FTK 576
FTK
Sbjct: 173 FTK 175
>At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C)
contains Pfam profile: PF00826: Ribosomal L10
Length = 221
Score = 201 bits (491), Expect = 2e-52
Identities = 111/183 (60%), Positives = 126/183 (68%)
Frame = +1
Query: 28 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 207
MGRRPARCYR K KPYPKSR+CRGVPDPKIRI+D+G KR VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60
Query: 208 SSEALEAGRICCNKYL*RTAERISSISSMRLHPFHVIRINKMLSCAGADRLQTGMRGAFX 387
SSEALEA RI CNKY+ ++A + + +R+HPFHV+RINKMLSCAGADRLQTGMRGAF
Sbjct: 61 SSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
Query: 388 KPQGTVARGFFPGXPKLDSPSCHCALVTGXXHRSSKLCGRAXFXFPRXSKRFYVSKESXG 567
K GT AR G L S C G H L RA F FP K VS++ G
Sbjct: 121 KALGTCARVAI-GQVLL---SVRCKDNHG-VHAQEAL-RRAKFKFPGRQK-IIVSRK-WG 172
Query: 568 FTK 576
FTK
Sbjct: 173 FTK 175
>At5g48310.1 68418.m05968 expressed protein
Length = 1156
Score = 31.1 bits (67), Expect = 0.57
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = -3
Query: 204 LFIFVGHQVHAQWKVVNGRSLLTQIEDTDLGIRYTPTEPRFRIR-FIFAVPVASCWPAPH 28
LF+ + +++ A K+ N L + I+ +L T+ R+R F+ AVP SC P PH
Sbjct: 736 LFLIISNEIEADIKITNEHVLPSSIDLANLAAVVYSTQLCHRLRAFLSAVP-PSC-PLPH 793
Query: 27 GDLYLV 10
+ L+
Sbjct: 794 VNELLI 799
>At1g48400.1 68414.m05406 F-box family protein contains F-box domain
Pfam:PF00646
Length = 513
Score = 27.9 bits (59), Expect = 5.3
Identities = 10/39 (25%), Positives = 19/39 (48%)
Frame = +1
Query: 445 PSCHCALVTGXXHRSSKLCGRAXFXFPRXSKRFYVSKES 561
P+ H ++ G HR + CG A P+ ++ +E+
Sbjct: 401 PNLHTLVIKGLVHRVTSRCGDACACIPKKQRKIVQKEEA 439
>At1g53180.1 68414.m06027 expressed protein
Length = 358
Score = 27.1 bits (57), Expect = 9.3
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 37 RPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGK 141
R +R RYC + PYP S P+ K+ D+GK
Sbjct: 27 RRSRGLRYCHSDPYPSSSSTSTSPE-KMGDSDIGK 60
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,675,597
Number of Sequences: 28952
Number of extensions: 289619
Number of successful extensions: 758
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1161268208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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